BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619423.2.1
(886 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076983.1| Avena sativa AsHHT4 mRNA for hydroxyanthran... 317 9e-087
dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthran... 176 2e-044
dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthran... 174 9e-044
dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthran... 165 8e-041
>dbj|AB076983.1| Avena sativa AsHHT4 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 4, partial cds
Length = 1100
Score = 317 bits (160), Expect = 9e-087
Identities = 454/548 (82%), Gaps = 3/548 (0%)
Strand = Plus / Plus
Query: 1 tgcaccccggttcagcacatatgcagtgctagcggcacatgtctggaaatgtgtctccct 60
|||||| || |||||||| || || || ||||| |||||||||||| |||||||||||
Sbjct: 355 tgcaccgcgtttcagcacgtacgctgttctagccgcacatgtctggcgctgtgtctccct 414
Query: 61 tgcacgcagcctacctcctgaacaacccaccaagttgtattgcgccactgatggccgtca 120
||| || |||| ||| | ||||| ||||||||| |||| || ||||| || || || ||
Sbjct: 415 tgcgcgtggcctgcctgccgaacagcccaccaagctgtactgtgccaccgacgggcgaca 474
Query: 121 aacgctacagcctccactaccagatgggtactttggcaatgtcatcttcaccgcgacacc 180
||| ||||| || | || || || ||||| || || |||||||||||||| || ||
Sbjct: 475 tcggctgcagcc-ccgttgccggagggttacttcggaaacgtcatcttcaccgc-ac-cc 531
Query: 181 acttgctgaggcgggcaaggtgaccagtgagctggcagaaggagcagcagtcatccaggg 240
||| |||||||| |||||||||||| ||| ||||||| |||||||| |||||||||||
Sbjct: 532 actcgctgaggcaggcaaggtgaccggtgccgtggcagatggagcagctgtcatccaggg 591
Query: 241 agcactggataggatggacaacgactactgccgctcagcgttagactacctggagcttca 300
|||||||||||||||| | |||||||||||||||||||||| |||||||||||| ||
Sbjct: 592 agcactggataggatgtccgacgactactgccgctcagcgttggactacctggagacgca 651
Query: 301 accggatctgtcagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggct 360
|||||| |||||||| | || || ||||| || |||||||| ||||| ||||| || ||
Sbjct: 652 gccggatttgtcagcattggtccgcggagcccacaccttccggtgccctaacctcggcct 711
Query: 361 caccagctgggtgcgccttcctatccatgatgctgacttcggatggggccggcctgtgtt 420
|||||||||||||||||| || ||||| | || || ||||| ||||| ||||| |||||
Sbjct: 712 caccagctgggtgcgcctgccgatccacaacgccgatttcggttgggggcggcccgtgtt 771
Query: 421 catggggccaggtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatgg 480
|||||| || ||||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 772 catgggtcctggtggcattgcctatgaggggctggcgttcgtcctcccgagcgcgaacaa 831
Query: 481 cgacggcagcctgtccattgctatctcgttgcaggctgagcacatggagaagttccggaa 540
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 832 ggacggcagcctgtccatcgccatctcgttgcaggccgagcacatggagaagttccggaa 891
Query: 541 gctaatcg 548
||| ||||
Sbjct: 892 gctgatcg 899
>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 3, complete cds
Length = 1659
Score = 176 bits (89), Expect = 2e-044
Identities = 239/289 (82%)
Strand = Plus / Plus
Query: 253 gatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtc 312
||||||| |||| ||||||| ||| ||| | |||||||| ||||| || ||||| |||||
Sbjct: 1023 gatggacgacgagtactgccactcggcgctggactacctagagctgcagccggacctgtc 1082
Query: 313 agcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggt 372
|| || || || || ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct: 1083 ggcgctggtccgcggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggt 1142
Query: 373 gcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccagg 432
|||||| || ||||| || || |||||||| ||||||||||| ||||||||||| || ||
Sbjct: 1143 gcgcctgccgatccacgacgccgacttcggctggggccggcccgtgttcatgggccccgg 1202
Query: 433 tggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcct 492
||||| || || || || || ||||| || ||||| || || || |||||||||||||
Sbjct: 1203 cggcatcgcctacgaggggctcgcgttcgtgctccccagcgccaaccgcgacggcagcct 1262
Query: 493 gtccattgctatctcgttgcaggctgagcacatggagaagttccggaag 541
||| | || |||||| ||||||| ||||||||||||||||||||||||
Sbjct: 1263 gtcggtggccatctcgctgcaggccgagcacatggagaagttccggaag 1311
>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 1, complete cds
Length = 1755
Score = 174 bits (88), Expect = 9e-044
Identities = 319/396 (80%)
Strand = Plus / Plus
Query: 146 gggtactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtgacc 205
|||||||| ||||| ||||||||||| || || || || || ||||||||||||||||||
Sbjct: 1043 gggtacttcggcaacgtcatcttcacggccacgccgctcgccgaggcgggcaaggtgacc 1102
Query: 206 agtgagctggcagaaggagcagcagtcatccagggagcactggataggatggacaacgac 265
| |||||| || || || | ||||||| || ||||| | ||||||| ||||
Sbjct: 1103 ggctcgctggcggacggggcgaccacgatccaggacgcgctggagaagatggacgacgag 1162
Query: 266 tactgccgctcagcgttagactacctggagcttcaaccggatctgtcagcacttgtgcgt 325
||||||| ||| ||| | |||||||| ||||| || ||||| ||||| || || || ||
Sbjct: 1163 tactgccactcggcgctggactacctagagctgcagccggacctgtcggcgctggtccgc 1222
Query: 326 ggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatc 385
|| ||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 1223 ggcgcgcacacgttccggtgccccaacctcgggctcaccagctgggtgcgcctgccgatc 1282
Query: 386 catgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtat 445
|| || || |||||||| ||||||||||| ||||||||||| || || ||||| || ||
Sbjct: 1283 cacgacgccgacttcggctggggccggcccgtgttcatgggccccggcggcatcgcctac 1342
Query: 446 gaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatc 505
|| || || || || || ||||| || || || |||||||||||||||| | || |||
Sbjct: 1343 gaggggctcgccttcgtgctccccagcgccaaccgcgacggcagcctgtcggtggccatc 1402
Query: 506 tcgttgcaggctgagcacatggagaagttccggaag 541
||| ||||||| ||||||||||||||||||||||||
Sbjct: 1403 tcgctgcaggccgagcacatggagaagttccggaag 1438
>dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 2, complete cds
Length = 1770
Score = 165 bits (83), Expect = 8e-041
Identities = 320/399 (80%)
Strand = Plus / Plus
Query: 143 gatgggtactttggcaatgtcatcttcaccgcgacaccacttgctgaggcgggcaaggtg 202
||||| ||||| ||||||| |||||||||||| || || || || |||||||||||||||
Sbjct: 1060 gatggatacttcggcaatgccatcttcaccgccacgccgctcgccgaggcgggcaaggtg 1119
Query: 203 accagtgagctggcagaaggagcagcagtcatccagggagcactggataggatggacaac 262
||| | ||||||||| || || | ||||||| || ||||| | ||||||| ||
Sbjct: 1120 accggctcgctggcagacggcgcgaccacgatccaggaggcgctggagaagatggacgac 1179
Query: 263 gactactgccgctcagcgttagactacctggagcttcaaccggatctgtcagcacttgtg 322
|| ||||||| ||| || |||||||||| || || || || || || ||||| || ||
Sbjct: 1180 gagtactgccactctgctctagactacctagaactgcagccagacctatcagctctggtc 1239
Query: 323 cgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcct 382
|| || || || || ||||| ||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 1240 cgcggcgcacacacgttccggtgccccaacctcgggctcaccagctgggtgcgcctgccg 1299
Query: 383 atccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcg 442
||||| || || |||||||| ||||||||||| ||||||||||| || || ||||| ||
Sbjct: 1300 atccacgacgccgacttcggctggggccggcccgtgttcatgggccccggcggcatcgcc 1359
Query: 443 tatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgct 502
|| || || || || || || ||||| || || || |||||||||||||||| | ||
Sbjct: 1360 tacgaggggctcgccttcgtgctccccagcgccaaccgcgacggcagcctgtcggtggcc 1419
Query: 503 atctcgttgcaggctgagcacatggagaagttccggaag 541
|||||| ||||||| ||||||||||||||||||||||||
Sbjct: 1420 atctcgctgcaggccgagcacatggagaagttccggaag 1458
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1921
Number of Sequences: 8143
Number of extensions: 1921
Number of successful extensions: 542
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 8
length of query: 886
length of database: 4,702,463
effective HSP length: 16
effective length of query: 870
effective length of database: 4,572,175
effective search space: 3977792250
effective search space used: 3977792250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)