BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591368.2.1
(543 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439146.1|BE439146 CDO595_WHE03A07F ITEC CDO Oat cDNA L... 34 0.12
gb|CN815522.1|CN815522 HRO4512_E11_J22ZS5 Lib AA071E1X Aven... 32 0.48
emb|AJ010729.1|AFA010729 Avena fatua alpha-Amy2D gene, exon... 32 0.48
>gb|BE439146.1|BE439146 CDO595_WHE03A07F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO595_WHE03A07, mRNA sequence
Length = 336
Score = 34.2 bits (17), Expect = 0.12
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 168 tcttgtctaatattttttgtc 188
|||||||| ||||||||||||
Sbjct: 180 tcttgtctcatattttttgtc 160
>gb|CN815522.1|CN815522 HRO4512_E11_J22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_E11_J22, mRNA sequence
Length = 721
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 153 tacgccctttattagt 168
||||||||||||||||
Sbjct: 151 tacgccctttattagt 136
>emb|AJ010729.1|AFA010729 Avena fatua alpha-Amy2D gene, exons 1-4
Length = 2701
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 244 ggtgactagctagctg 259
||||||||||||||||
Sbjct: 1831 ggtgactagctagctg 1816
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 756
Number of Sequences: 8143
Number of extensions: 756
Number of successful extensions: 230
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 5
length of query: 543
length of database: 4,702,463
effective HSP length: 16
effective length of query: 527
effective length of database: 4,572,175
effective search space: 2409536225
effective search space used: 2409536225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)