BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Aven... 86 5e-017
gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Aven... 74 2e-013
gb|CN819887.1|CN819887 HRO4407_D04_H07ZS5 Lib AA069E1X Aven... 40 0.003
gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Aven... 40 0.003
gb|CN816220.1|CN816220 HRO4518_C08_E16ZS5 Lib AA071E1X Aven... 34 0.18
gb|CN819994.1|CN819994 HRO4409_F09_K17ZS5 Lib AA069E1X Aven... 34 0.18
>gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H09_P18, mRNA
sequence
Length = 425
Score = 85.7 bits (43), Expect = 5e-017
Identities = 144/175 (82%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 395 cgtagcggtcgcgatcggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggcc 453
||||||| ||||| ||||||||||||||||||||||| | || | |||||| |||
Sbjct: 198 cgtagcgttcgcggtcggtgcagtagttgtagatggtat-gctccttcctgacccaggcg 140
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
||||| ||||||||| || | ||||||||| ||||||| ||||||||||||||| |||
Sbjct: 139 aggcgacggtactgctcgccatcgaggtcctggaactccttctggtcccaccagcgggcg 80
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtgga 568
||||| |||||| |||| ||||| || |||||||||||||| ||||| ||||
Sbjct: 79 ccctgagtggcgtagaacttggcctcggcagaggcctcgcagccatcgacatgga 25
>gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G07_M14, mRNA
sequence
Length = 393
Score = 73.8 bits (37), Expect = 2e-013
Identities = 108/129 (83%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 403 tcgcgatcggtgcagtagttgtagatggtgtagcggcg-cctgacgtcggccaggcggcg 461
||||| ||||||||||||||||||||||||| || | |||||| ||| ||||| ||
Sbjct: 146 tcgcggtcggtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcgacg 88
Query: 462 gtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggt 521
||| ||| || |||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 87 gtattgctcgccgtcgaggtcttggaactccttctggtcccaccagcgggcgccctgggt 28
Query: 522 ggcgcagaa 530
||| |||||
Sbjct: 27 ggcacagaa 19
>gb|CN819887.1|CN819887 HRO4407_D04_H07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_D04_H07, mRNA
sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 85 tcggtgcagtagttgtagat 66
>gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D06_G12, mRNA
sequence
Length = 324
Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 137 tcggtgcagtagttgtagat 118
>gb|CN816220.1|CN816220 HRO4518_C08_E16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_C08_E16, mRNA sequence
Length = 770
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 276 acaataccataccatac 292
|||||||||||||||||
Sbjct: 742 acaataccataccatac 726
>gb|CN819994.1|CN819994 HRO4409_F09_K17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_F09_K17, mRNA
sequence
Length = 821
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 694 cgcacgcccaggtcggc 710
|||||||||||||||||
Sbjct: 623 cgcacgcccaggtcggc 639
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1669
Number of Sequences: 8143
Number of extensions: 1669
Number of successful extensions: 575
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 11
length of query: 786
length of database: 4,702,463
effective HSP length: 16
effective length of query: 770
effective length of database: 4,572,175
effective search space: 3520574750
effective search space used: 3520574750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)