BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591258.2.1
(819 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 100 4e-021
gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Aven... 38 0.012
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 99.6 bits (50), Expect = 4e-021
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 482 gtccagcacgggcagcgcgagcccgacgcggaagtcgatcttgtgcgccacgccggcctt 541
||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 86 gtccagcacgggcagcgcggggccctcgcggaagtcgatcttgtgcgccacgccggcctt 27
Query: 542 ctcgat 547
||||||
Sbjct: 26 ctcgat 21
Score = 61.9 bits (31), Expect = 8e-010
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 342 agcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctcgtgg 401
|||||||||||||| | | ||||| |||||||||| |||| || || |||| ||||
Sbjct: 226 agcgtgttgtcgtatcctagcaggccgccgaccctgacgagcttcatgaggcgctggtgg 167
Query: 402 tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaa 448
||||||||| |||| ||||||||||||| ||||| ||||||||||
Sbjct: 166 tagttgaggtagttgtccttgtccgcgtcgacgaagacgaagtcgaa 120
>gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H08_O16, mRNA sequence
Length = 372
Score = 38.2 bits (19), Expect = 0.012
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 204 tcggcgatggcgacctggcagac 226
||||||||||||| |||||||||
Sbjct: 96 tcggcgatggcgagctggcagac 74
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2398
Number of Sequences: 8143
Number of extensions: 2398
Number of successful extensions: 830
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 3
length of query: 819
length of database: 4,702,463
effective HSP length: 16
effective length of query: 803
effective length of database: 4,572,175
effective search space: 3671456525
effective search space used: 3671456525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)