BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2576652.2.4
         (870 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815725.1|CN815725  HRO4514_H01_O02ZS5 Lib AA071E1X Aven...    40   0.003
gb|CN821551.1|CN821551  HRO4426_F02_K04ZS5 Lib AA069E1X Aven...    36   0.050

>gb|CN815725.1|CN815725 HRO4514_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4514_H01_O02, mRNA sequence
          Length = 575

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 ggtgacaataattttgggga 226
           ||||||||||||||||||||
Sbjct: 142 ggtgacaataattttgggga 161



>gb|CN821551.1|CN821551 HRO4426_F02_K04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4426_F02_K04, mRNA
           sequence
          Length = 701

 Score = 36.2 bits (18), Expect = 0.050
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 478 agagaagccgttctgttg 495
           ||||||||||||||||||
Sbjct: 561 agagaagccgttctgttg 544



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2182
Number of Sequences: 8143
Number of extensions: 2182
Number of successful extensions: 746
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 2
length of query: 870
length of database: 4,702,463
effective HSP length: 16
effective length of query: 854
effective length of database: 4,572,175
effective search space: 3904637450
effective search space used: 3904637450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)