BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550113.2.1
(803 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816832.1|CN816832 HRO4525_C10_E19ZS5 Lib AA071E1X Aven... 389 e-108
gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Aven... 343 1e-094
gb|CN821505.1|CN821505 HRO4426_B01_C02ZS5 Lib AA069E1X Aven... 248 7e-066
gb|CN815407.1|CN815407 HRO4509_C10_E19ZS5 Lib AA071E1X Aven... 240 2e-063
gb|CN820073.1|CN820073 HRO4410_G08_M16ZS5 Lib AA069E1X Aven... 228 6e-060
gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Aven... 220 1e-057
gb|CN814739.1|CN814739 HRO4502_A01_A02ZS5 Lib AA071E1X Aven... 208 6e-054
gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Aven... 202 3e-052
gb|CN820934.1|CN820934 HRO4421_F07_K13ZS5 Lib AA069E1X Aven... 188 5e-048
gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Aven... 46 5e-005
gb|CN815303.1|CN815303 HRO4508_B11_D22ZS5 Lib AA071E1X Aven... 34 0.18
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 34 0.18
>gb|CN816832.1|CN816832 HRO4525_C10_E19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_C10_E19, mRNA sequence
Length = 544
Score = 389 bits (196), Expect = e-108
Identities = 295/328 (89%)
Strand = Plus / Minus
Query: 339 tttgaggaagtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgc 398
||||||| |||||||| ||||| ||||||| |||||| || ||||| ||||||||||||
Sbjct: 351 tttgaggtggtcttgtccttggttttctgtattttcaagactttcttcacaatcttctgc 292
Query: 399 tcttcaaccaggaaagcacggatgatcctttctctaactgcagttccagatagtactccc 458
|| || |||||||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct: 291 tcctcgaccaggaaagcacgaatgatcctttctctaactgcaggtccagagagcactcca 232
Query: 459 ccatagggacggttcacagttctgcggttcctagacaacctggaccttttgtactcagct 518
|||||||||||||| ||||| |||||||||||||||||||| || ||||||||||| |
Sbjct: 231 ccatagggacggttgacagtcctgcggttcctagacaaccttgatcttttgtactcggta 172
Query: 519 ggcctcagatggggaatgccctggatcttcttcccggtcacgggacacttgggcccgctg 578
|||||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 171 ggcctcaggtggggaatcccctggatcttcttcccggtcacagggcatttggggccgcta 112
Query: 579 gctctcttcttggtgtactggtacacgagcttgccaccaggggtcttgacgacccgcgtc 638
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 111 gccctcttcttggtgtactggtacacgagcttaccacctggggtcttgacgacccgcgtc 52
Query: 639 tggttggacttcgtggcatagctgtgcc 666
||||||||||| ||||||||||||||||
Sbjct: 51 tggttggacttggtggcatagctgtgcc 24
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
Length = 683
Score = 343 bits (173), Expect = 1e-094
Identities = 311/357 (87%)
Strand = Plus / Minus
Query: 348 gtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgctcttcaacc 407
|||||||||||||| ||||| | ||||| |||||||| ||||||||||||||||| |||
Sbjct: 393 gtcttgtctttggttttctggattttcaggaccttcttaacaatcttctgctcttcgacc 334
Query: 408 aggaaagcacggatgatcctttctctaactgcagttccagatagtactcccccataggga 467
| ||||||||| || ||||| || ||||| |||| |||||| || ||||| ||||| |||
Sbjct: 333 aagaaagcacgaataatcctctccctaacagcaggtccagaaagcactccaccataagga 274
Query: 468 cggttcacagttctgcggttcctagacaacctggaccttttgtactcagctggcctcaga 527
||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 273 cggttcacagtcctgcggttcctagacaaccttgacctcttgtactcagtaggcctcagg 214
Query: 528 tggggaatgccctggatcttcttcccggtcacgggacacttgggcccgctggctctcttc 587
|| ||||| ||||||||||||||||| || ||||| |||||||| ||||| || ||||||
Sbjct: 213 tgaggaattccctggatcttcttcccagtaacggggcacttgggaccgctagccctcttc 154
Query: 588 ttggtgtactggtacacgagcttgccaccaggggtcttgacgacccgcgtctggttggac 647
|| ||||||||||| || ||||| ||||| ||||||||||||||||| ||||| || |||
Sbjct: 153 tttgtgtactggtaaacaagctttccacctggggtcttgacgacccgggtctgattcgac 94
Query: 648 ttcgtggcatagctgtgccgcttgcggtaggtcagacgctgcaccatcttgccgccg 704
|| || || |||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 93 tttgtcgcgtagctgtgacgcttccggtaagtcagacgctgcaccatcttgccgccg 37
>gb|CN821505.1|CN821505 HRO4426_B01_C02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_B01_C02, mRNA
sequence
Length = 459
Score = 248 bits (125), Expect = 7e-066
Identities = 218/249 (87%)
Strand = Plus / Minus
Query: 339 tttgaggaagtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgc 398
||||||| |||||||| ||||| ||||||| |||||| || ||||| ||||||||||||
Sbjct: 258 tttgaggtggtcttgtccttggttttctgtattttcaagactttcttcacaatcttctgc 199
Query: 399 tcttcaaccaggaaagcacggatgatcctttctctaactgcagttccagatagtactccc 458
|| || |||||||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct: 198 tcctcgaccaggaaagcacgaatgatcctttctctaactgcaggtccagagagcactcca 139
Query: 459 ccatagggacggttcacagttctgcggttcctagacaacctggaccttttgtactcagct 518
||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| |
Sbjct: 138 ccatatggacggttgacagtcctgcggttcctagacaaccttgatcttttgtactcggta 79
Query: 519 ggcctcagatggggaatgccctggatcttcttcccggtcacgggacacttgggcccgctg 578
||||| || |||||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 78 ggcctgaggtggggaatcccctggatcttcttcccggtcacagggcacttggggccgcta 19
Query: 579 gctctcttc 587
|| ||||||
Sbjct: 18 gccctcttc 10
>gb|CN815407.1|CN815407 HRO4509_C10_E19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C10_E19, mRNA sequence
Length = 573
Score = 240 bits (121), Expect = 2e-063
Identities = 274/325 (84%)
Strand = Plus / Minus
Query: 357 ttggtcttctgtaatttcaacaccttcttgacaatcttctgctcttcaaccaggaaagca 416
||||||||||| | |||| |||||||| || ||||| |||||||| || ||||| ||
Sbjct: 325 ttggtcttctggatcttcagaaccttcttcacgatcttttgctcttccacaaggaatgct 266
Query: 417 cggatgatcctttctctaactgcagttccagatagtactcccccatagggacggttcaca 476
||||||||||| || ||||| || | |||||||| || || ||||| |||||||||||
Sbjct: 265 cggatgatcctctccctaacagccgggccagatagaacaccaccataaggacggttcacg 206
Query: 477 gttctgcggttcctagacaacctggaccttttgtactcagctggcctcagatggggaatg 536
||||| | |||||| || || ||||||||||||||||||| |||||||| || |||||
Sbjct: 205 gttctcctgttcctggataatctggaccttttgtactcagtaggcctcaggtgaggaatc 146
Query: 537 ccctggatcttcttcccggtcacgggacacttgggcccgctggctctcttcttggtgtac 596
|||||||||||||| ||||| || || || || |||||||| || |||||||| ||||||
Sbjct: 145 ccctggatcttcttgccggtgaccgggcatttcggcccgctcgccctcttcttcgtgtac 86
Query: 597 tggtacacgagcttgccaccaggggtcttgacgacccgcgtctggttggacttcgtggca 656
|||||||||||||| || || |||||||||||||||| |||||||||||||| |||||
Sbjct: 85 tggtacacgagcttccctcctggggtcttgacgaccctggtctggttggacttggtggcg 26
Query: 657 tagctgtgccgcttgcggtaggtca 681
|||||||||||||| ||||| ||||
Sbjct: 25 tagctgtgccgcttccggtacgtca 1
>gb|CN820073.1|CN820073 HRO4410_G08_M16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G08_M16, mRNA
sequence
Length = 384
Score = 228 bits (115), Expect = 6e-060
Identities = 169/187 (90%)
Strand = Plus / Minus
Query: 339 tttgaggaagtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgc 398
||||||| ||||||||| ||||| ||||||| |||||| || ||||| ||||||||||||
Sbjct: 187 tttgaggcagtcttgtccttggttttctgtattttcaagactttcttcacaatcttctgc 128
Query: 399 tcttcaaccaggaaagcacggatgatcctttctctaactgcagttccagatagtactccc 458
|| || ||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct: 127 tcctcgaccaggaaagcacggatgatcctttctctaactgcaggtccagagagcactcca 68
Query: 459 ccatagggacggttcacagttctgcggttcctagacaacctggaccttttgtactcagct 518
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 67 ccatagggacggttcacagtcctgcggttcctagacaaccttgatcttttgtactcagta 8
Query: 519 ggcctca 525
|||||||
Sbjct: 7 ggcctca 1
>gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_D08_G16, mRNA
sequence
Length = 546
Score = 220 bits (111), Expect = 1e-057
Identities = 198/227 (87%)
Strand = Plus / Minus
Query: 348 gtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgctcttcaacc 407
|||||||||||||| ||||| | ||||| |||||||||||||||||||||||||| |||
Sbjct: 236 gtcttgtctttggttttctggattttcaggaccttcttgacaatcttctgctcttcgacc 177
Query: 408 aggaaagcacggatgatcctttctctaactgcagttccagatagtactcccccataggga 467
| ||||||||| |||||||| || ||||| |||| |||||| || ||||| || || |||
Sbjct: 176 aagaaagcacgaatgatcctctccctaacagcaggtccagaaagcactccaccgtaagga 117
Query: 468 cggttcacagttctgcggttcctagacaacctggaccttttgtactcagctggcctcaga 527
|||||||| || |||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 116 cggttcacggtcctgcggttcctagacaaccttgacctcttgtactcagtaggcctcagg 57
Query: 528 tggggaatgccctggatcttcttcccggtcacgggacacttgggccc 574
|| ||||| ||||||||||||||||| || |||| ||||||||||||
Sbjct: 56 tgaggaattccctggatcttcttcccagtaacggaacacttgggccc 10
>gb|CN814739.1|CN814739 HRO4502_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A01_A02, mRNA sequence
Length = 444
Score = 208 bits (105), Expect = 6e-054
Identities = 193/221 (87%), Gaps = 1/221 (0%)
Strand = Plus / Minus
Query: 339 tttgaggaagtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgc 398
||||||| |||||||| ||||| ||||||| |||||| || ||||| ||||||||||||
Sbjct: 231 tttgaggtggtcttgtccttggttttctgtattttcaagactttcttcacaatcttctgc 172
Query: 399 tcttcaaccaggaaagcacggatgatcctttctctaactgcagttccagatagtactccc 458
|| || |||||||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct: 171 tcctcgaccaggaaagcacgaatgatcctttctctaactgcaggtccagagagcactcca 112
Query: 459 ccatagggacggttcacagttctgcggttcctagacaacctggaccttttgtactcagct 518
||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| |
Sbjct: 111 ccatatggacggttgacagtcctgcggttcctagacaaccttgatcttttgtactcggta 52
Query: 519 ggcctcagatggggaatgccctggatcttcttcccggtcac 559
||||| || |||||||| |||||| |||||||||| |||||
Sbjct: 51 ggcctgaggtggggaatcccctgg-tcttcttcccagtcac 12
>gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H11_P22, mRNA sequence
Length = 720
Score = 202 bits (102), Expect = 3e-052
Identities = 180/206 (87%)
Strand = Plus / Minus
Query: 348 gtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgctcttcaacc 407
|||||||||||||| ||||| | ||||| |||||||||||||||||||||||||| |||
Sbjct: 443 gtcttgtctttggttttctggattttcaggaccttcttgacaatcttctgctcttcgacc 384
Query: 408 aggaaagcacggatgatcctttctctaactgcagttccagatagtactcccccataggga 467
| ||||||||| |||||||| || ||||| |||| |||||| || ||||| || || |||
Sbjct: 383 aagaaagcacgaatgatcctctccctaacagcaggtccagaaagcactccaccgtaagga 324
Query: 468 cggttcacagttctgcggttcctagacaacctggaccttttgtactcagctggcctcaga 527
|||||||| || |||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 323 cggttcacggtcctgcggttcctagacaaccttgacctcttgtactcagtaggcctcagg 264
Query: 528 tggggaatgccctggatcttcttccc 553
|| ||||| |||||||||||||||||
Sbjct: 263 tgaggaattccctggatcttcttccc 238
>gb|CN820934.1|CN820934 HRO4421_F07_K13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_F07_K13, mRNA
sequence
Length = 395
Score = 188 bits (95), Expect = 5e-048
Identities = 152/171 (88%)
Strand = Plus / Minus
Query: 339 tttgaggaagtcttgtctttggtcttctgtaatttcaacaccttcttgacaatcttctgc 398
||||||| |||||||| ||||| ||||||| |||||| || ||||| ||||||||||||
Sbjct: 183 tttgaggtggtcttgtccttggttttctgtattttcaagactttcttcacaatcttctgc 124
Query: 399 tcttcaaccaggaaagcacggatgatcctttctctaactgcagttccagatagtactccc 458
|| || |||||||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct: 123 tcctcgaccaggaaagcacgaatgatcctttctctaactgcaggtccagagagcactcca 64
Query: 459 ccatagggacggttcacagttctgcggttcctagacaacctggaccttttg 509
|||||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 63 ccatagggacggttgacagtcctgcggttcctagacaaccttgatcttttg 13
>gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B01_D01, mRNA
sequence
Length = 408
Score = 46.1 bits (23), Expect = 5e-005
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 357 ttggtcttctgtaatttcaacaccttcttgacaatcttctgctcttcaaccaggaaagca 416
||||||||||| | |||| |||||||| || |||||||||||||| || ||||| ||
Sbjct: 83 ttggtcttctggatcttcagaaccttcttcacgatcttctgctcttcgacaaggaatgcg 24
Query: 417 cggatgatcct 427
| |||||||||
Sbjct: 23 cagatgatcct 13
>gb|CN815303.1|CN815303 HRO4508_B11_D22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_B11_D22, mRNA sequence
Length = 627
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 765 gaaagagccccgcgtac 781
|||||||||||||||||
Sbjct: 406 gaaagagccccgcgtac 422
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 779 tacctgcccgggcggcc 795
|||||||||||||||||
Sbjct: 23 tacctgcccgggcggcc 7
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2002
Number of Sequences: 8143
Number of extensions: 2002
Number of successful extensions: 619
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 13
length of query: 803
length of database: 4,702,463
effective HSP length: 16
effective length of query: 787
effective length of database: 4,572,175
effective search space: 3598301725
effective search space used: 3598301725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)