BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521865.2.1
(638 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Aven... 365 e-101
gb|CN816486.1|CN816486 HRO4521_C09_E17ZS5 Lib AA071E1X Aven... 349 2e-096
gb|CN816344.1|CN816344 HRO4519_F08_L15ZS5 Lib AA071E1X Aven... 52 6e-007
gb|CN816946.1|CN816946 HRO4526_E11_I22ZS5 Lib AA071E1X Aven... 34 0.14
>gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_B12_C23, mRNA sequence
Length = 781
Score = 365 bits (184), Expect = e-101
Identities = 289/324 (89%)
Strand = Plus / Plus
Query: 36 tggtgcatgagagcgccaagattggagaaggttgtctgattggtcctgatgtcgccattg 95
||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || |
Sbjct: 282 tggtgcacgagagtgccaaaattggagagggttgtctgattggtcctgatgttgctatcg 341
Query: 96 gacctgggtgtgttgtggaggacggcgtgaggctttcccgctgcactgtcatgcgcggcg 155
||||||| |||||||||||||| ||||||||||||||||| || || || ||||| || |
Sbjct: 342 gacctggatgtgttgtggaggatggcgtgaggctttcccgatgtacggtgatgcgtggtg 401
Query: 156 tgcgtatcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttg 215
|||||| |||||||||||||||||||||||||||||| | || |||||||| ||||| |
Sbjct: 402 cgcgtattaagaagcatgcttgcatctcaaacagcattgttggatggcactcgactgtcg 461
Query: 216 gtcaatgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatg 275
| |||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 462 gaaaatgggcacgcatagaaaatatgactatcctgggagaggatgtacatgtaggtgatg 521
Query: 276 aggtgtacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctga 335
|||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 522 aggtctacagcaatggtggtgttgttctaccacacaaagagatcaagtcaagcatcctga 581
Query: 336 agcctgagatcgtcatgtgagctc 359
||||||||||||||||||||||||
Sbjct: 582 agcctgagatcgtcatgtgagctc 605
>gb|CN816486.1|CN816486 HRO4521_C09_E17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C09_E17, mRNA sequence
Length = 431
Score = 349 bits (176), Expect = 2e-096
Identities = 272/304 (89%)
Strand = Plus / Plus
Query: 56 attggagaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggag 115
|||||||| ||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct: 2 attggagagggttgtctgattggtcctgatgttgctatcggacctggatgtgttgtggag 61
Query: 116 gacggcgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgct 175
|| || |||||||||||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 62 gatggtgtgaggctttcccgatgtacggtgatgcgtggcgcgcgtattaagaagcatgct 121
Query: 176 tgcatctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagag 235
|||||||||||||||||| | || |||||||| |||||||| |||||||||| |||||
Sbjct: 122 tgcatctcaaacagcattgttggatggcactcgactgttggaaaatgggcacgcatagaa 181
Query: 236 aatatgactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggt 295
||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||| |||
Sbjct: 182 aatatgactatcctgggagaggatgtacatgtaggtgatgaggtctacagcaatggtggt 241
Query: 296 gttgttctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtga 355
|||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 242 gttgttctaccacacaaagagatcaagtcaagcatcctgaagcccgagatcgtcatgtga 301
Query: 356 gctc 359
||||
Sbjct: 302 gctc 305
>gb|CN816344.1|CN816344 HRO4519_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_F08_L15, mRNA sequence
Length = 261
Score = 52.0 bits (26), Expect = 6e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 314 gagatcaagtcaagcattctgaagcctgagatcgtcatgtga 355
||||||||||| ||||| || ||||| |||||||||||||||
Sbjct: 24 gagatcaagtccagcatactcaagcccgagatcgtcatgtga 65
>gb|CN816946.1|CN816946 HRO4526_E11_I22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E11_I22, mRNA sequence
Length = 800
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 242 actatcctgggggaggatgtt 262
|||||||||||||||| ||||
Sbjct: 49 actatcctgggggagggtgtt 69
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1716
Number of Sequences: 8143
Number of extensions: 1716
Number of successful extensions: 509
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 4
length of query: 638
length of database: 4,702,463
effective HSP length: 16
effective length of query: 622
effective length of database: 4,572,175
effective search space: 2843892850
effective search space used: 2843892850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)