BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521502.2.2
         (1862 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816125.1|CN816125  HRO4517_C06_E11ZS5 Lib AA071E1X Aven...   103   6e-022
gb|CN819334.1|CN819334  HRO4452_G03_M06ZS5 Lib AA070E1X Aven...    62   2e-009
gb|CN815670.1|CN815670  HRO4514_C03_E06ZS5 Lib AA071E1X Aven...    34   0.43 
gb|CN817712.1|CN817712  HRO4461_F05_L09ZS5 Lib AA070E1X Aven...    34   0.43 
gb|CN817735.1|CN817735  HRO4461_E02_J03ZS5 Lib AA070E1X Aven...    34   0.43 
gb|CN819155.1|CN819155  HRO4468_F05_K10ZS5 Lib AA070E1X Aven...    34   0.43 
gb|CN821400.1|CN821400  HRO4424_H04_P08ZS5 Lib AA069E1X Aven...    34   0.43 
>gb|CN816125.1|CN816125 HRO4517_C06_E11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4517_C06_E11, mRNA sequence
          Length = 851

 Score =  103 bits (52), Expect = 6e-022
 Identities = 109/128 (85%)
 Strand = Plus / Minus

                                                                       
Query: 450 tgacagtgggctgtccttgcccatgaggcaggttccctgcctgacgttgcagatggggta 509
           |||||||||||||||||||  ||||  |||||||||| ||||   || ||| |  |||||
Sbjct: 515 tgacagtgggctgtccttggtcatgctgcaggttccccgcctagtgtcgcaaacagggta 456

                                                                       
Query: 510 gtcatgggggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagca 569
           |||||| |||||||||||||||||||| ||||||||| | || ||||| || ||||||||
Sbjct: 455 gtcatgagggcagcagctgtagtgatcatcgcagcagctagcaccctccagtgggcagca 396

                   
Query: 570 gccccagg 577
           ||||||||
Sbjct: 395 gccccagg 388
>gb|CN819334.1|CN819334 HRO4452_G03_M06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4452_G03_M06, mRNA sequence
          Length = 416

 Score = 61.9 bits (31), Expect = 2e-009
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 450 tgacagtgggctgtccttgcccatgaggcaggttccctgcctgacgttgcagatggggta 509
           |||||||||||||||||||  ||||  |||||||||| |||||  ||  || |  |||||
Sbjct: 83  tgacagtgggctgtccttggtcatgctgcaggttccccgcctggtgtcacaaacagggta 24

                                  
Query: 510 gtcatgggggcagcagctgtagt 532
           |||||| ||||||||||||||||
Sbjct: 23  gtcatgagggcagcagctgtagt 1
>gb|CN815670.1|CN815670 HRO4514_C03_E06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4514_C03_E06, mRNA sequence
          Length = 390

 Score = 34.2 bits (17), Expect = 0.43
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1710 ggagcagcagcagcagc 1726
            |||||||||||||||||
Sbjct: 29   ggagcagcagcagcagc 45
>gb|CN817712.1|CN817712 HRO4461_F05_L09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
            Avena sativa cDNA clone HRO4461_F05_L09, mRNA sequence
          Length = 586

 Score = 34.2 bits (17), Expect = 0.43
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1320 cctcggcgacggcgccc 1336
            |||||||||||||||||
Sbjct: 36   cctcggcgacggcgccc 20
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
            Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
          Length = 683

 Score = 34.2 bits (17), Expect = 0.43
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1729 tgccgccgccgccgccg 1745
            |||||||||||||||||
Sbjct: 44   tgccgccgccgccgccg 28
>gb|CN819155.1|CN819155 HRO4468_F05_K10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
            Avena sativa cDNA clone HRO4468_F05_K10, mRNA sequence
          Length = 479

 Score = 34.2 bits (17), Expect = 0.43
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1712 agcagcagcagcagcgc 1728
            |||||||||||||||||
Sbjct: 106  agcagcagcagcagcgc 122
>gb|CN821400.1|CN821400 HRO4424_H04_P08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4424_H04_P08, mRNA
            sequence
          Length = 782

 Score = 34.2 bits (17), Expect = 0.43
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1709 aggagcagcagcagcag 1725
            |||||||||||||||||
Sbjct: 563  aggagcagcagcagcag 547
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4772
Number of Sequences: 8143
Number of extensions: 4772
Number of successful extensions: 1623
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1594
Number of HSP's gapped (non-prelim): 24
length of query: 1862
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1845
effective length of database: 4,564,032
effective search space: 8420639040
effective search space used: 8420639040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)