BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521502.2.2
(1862 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816125.1|CN816125 HRO4517_C06_E11ZS5 Lib AA071E1X Aven... 103 6e-022
gb|CN819334.1|CN819334 HRO4452_G03_M06ZS5 Lib AA070E1X Aven... 62 2e-009
gb|CN815670.1|CN815670 HRO4514_C03_E06ZS5 Lib AA071E1X Aven... 34 0.43
gb|CN817712.1|CN817712 HRO4461_F05_L09ZS5 Lib AA070E1X Aven... 34 0.43
gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Aven... 34 0.43
gb|CN819155.1|CN819155 HRO4468_F05_K10ZS5 Lib AA070E1X Aven... 34 0.43
gb|CN821400.1|CN821400 HRO4424_H04_P08ZS5 Lib AA069E1X Aven... 34 0.43
>gb|CN816125.1|CN816125 HRO4517_C06_E11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_C06_E11, mRNA sequence
Length = 851
Score = 103 bits (52), Expect = 6e-022
Identities = 109/128 (85%)
Strand = Plus / Minus
Query: 450 tgacagtgggctgtccttgcccatgaggcaggttccctgcctgacgttgcagatggggta 509
||||||||||||||||||| |||| |||||||||| |||| || ||| | |||||
Sbjct: 515 tgacagtgggctgtccttggtcatgctgcaggttccccgcctagtgtcgcaaacagggta 456
Query: 510 gtcatgggggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagca 569
|||||| |||||||||||||||||||| ||||||||| | || ||||| || ||||||||
Sbjct: 455 gtcatgagggcagcagctgtagtgatcatcgcagcagctagcaccctccagtgggcagca 396
Query: 570 gccccagg 577
||||||||
Sbjct: 395 gccccagg 388
>gb|CN819334.1|CN819334 HRO4452_G03_M06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_G03_M06, mRNA sequence
Length = 416
Score = 61.9 bits (31), Expect = 2e-009
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 450 tgacagtgggctgtccttgcccatgaggcaggttccctgcctgacgttgcagatggggta 509
||||||||||||||||||| |||| |||||||||| ||||| || || | |||||
Sbjct: 83 tgacagtgggctgtccttggtcatgctgcaggttccccgcctggtgtcacaaacagggta 24
Query: 510 gtcatgggggcagcagctgtagt 532
|||||| ||||||||||||||||
Sbjct: 23 gtcatgagggcagcagctgtagt 1
>gb|CN815670.1|CN815670 HRO4514_C03_E06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C03_E06, mRNA sequence
Length = 390
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1710 ggagcagcagcagcagc 1726
|||||||||||||||||
Sbjct: 29 ggagcagcagcagcagc 45
>gb|CN817712.1|CN817712 HRO4461_F05_L09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_F05_L09, mRNA sequence
Length = 586
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1320 cctcggcgacggcgccc 1336
|||||||||||||||||
Sbjct: 36 cctcggcgacggcgccc 20
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
Length = 683
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1729 tgccgccgccgccgccg 1745
|||||||||||||||||
Sbjct: 44 tgccgccgccgccgccg 28
>gb|CN819155.1|CN819155 HRO4468_F05_K10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_F05_K10, mRNA sequence
Length = 479
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1712 agcagcagcagcagcgc 1728
|||||||||||||||||
Sbjct: 106 agcagcagcagcagcgc 122
>gb|CN821400.1|CN821400 HRO4424_H04_P08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_H04_P08, mRNA
sequence
Length = 782
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1709 aggagcagcagcagcag 1725
|||||||||||||||||
Sbjct: 563 aggagcagcagcagcag 547
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4772
Number of Sequences: 8143
Number of extensions: 4772
Number of successful extensions: 1623
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1594
Number of HSP's gapped (non-prelim): 24
length of query: 1862
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1845
effective length of database: 4,564,032
effective search space: 8420639040
effective search space used: 8420639040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)