BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521459.2.4
         (760 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814947.1|CN814947  HRO4504_C01_F02ZS5 Lib AA071E1X Aven...    36   0.044
gb|AF140554.1|AF140554  Avena sativa DNA-binding protein WRK...    34   0.17 

>gb|CN814947.1|CN814947 HRO4504_C01_F02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4504_C01_F02, mRNA sequence
          Length = 652

 Score = 36.2 bits (18), Expect = 0.044
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 34  gatattatgcttgtttgttggc 55
           ||||||||| ||||||||||||
Sbjct: 506 gatattatgtttgtttgttggc 527



>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
          Length = 2073

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 320  agatcttggctttggcctcca 340
            ||||| |||||||||||||||
Sbjct: 1850 agatcatggctttggcctcca 1830



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1940
Number of Sequences: 8143
Number of extensions: 1940
Number of successful extensions: 497
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 2
length of query: 760
length of database: 4,702,463
effective HSP length: 16
effective length of query: 744
effective length of database: 4,572,175
effective search space: 3401698200
effective search space used: 3401698200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)