BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521334.2.1
(1277 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820263.1|CN820263 HRO4417_D05_G09ZS5 Lib AA069E1X Aven... 90 6e-018
gb|CN818645.1|CN818645 HRO4467_E04_I07ZS5 Lib AA070E1X Aven... 34 0.29
emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3) 34 0.29
emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4) 34 0.29
emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochr... 34 0.29
>gb|CN820263.1|CN820263 HRO4417_D05_G09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_D05_G09, mRNA
sequence
Length = 592
Score = 89.7 bits (45), Expect = 6e-018
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 856 ggcacagatgagaactccctgaccagggtcatcaccacccgcgctgaggtggacctcaaa 915
|||||||| ||||||||||| || ||| |||| ||||| ||||| ||||||||||| ||
Sbjct: 313 ggcacagacgagaactcccttacaaggatcataaccactcgcgccgaggtggacctgaag 372
Query: 916 ctgattaaggaggcgtaccagaagaggaacagcgtgccgctggag 960
||||| |||||||| |||| |||||| ||||| || |||||||||
Sbjct: 373 ctgatcaaggaggcctacctgaagagaaacagtgtcccgctggag 417
Score = 50.1 bits (25), Expect = 5e-006
Identities = 190/245 (77%)
Strand = Plus / Plus
Query: 584 tggcacactcagaagccaaactacttcatgagaagatccatcacaaggcttacagtgatg 643
|||||||||| || |||||| |||| |||| |||||||| | |||||||| |||| |
Sbjct: 41 tggcacactctgaggccaaattactccatggtaagatccaggagaaggcttatggtgacg 100
Query: 644 atgagatcatcagaatcctcaccactaggagcaaacctcagctgattgctacattcaatc 703
| || || ||||| || ||||| || ||||||||| ||||||| |||| ||||||||
Sbjct: 101 aggaaattatcaggattctcactacaaggagcaaagctcagctacttgcaacattcaaca 160
Query: 704 attacaatgatgcatttggccaccgaatcaacaaggatctgaaggctgacccccaggacg 763
|||||||||| || | || | |||| |||||| ||||||| || ||| |||| |
Sbjct: 161 gttacaatgatcagttcagtcatcccatcaccaaggacctgaaggaggatcccaaggatg 220
Query: 764 agtacctcagaacgctgcgggcgatcatccggtgcttcagttgccctgacaggtactttg 823
||| ||| || ||| |||||||||| |||||||| ||||||||||| |||||||
Sbjct: 221 agttcctggcgaccctgagggcgatcataaggtgcttcgcctgccctgacagatactttg 280
Query: 824 agaag 828
|||||
Sbjct: 281 agaag 285
>gb|CN818645.1|CN818645 HRO4467_E04_I07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_E04_I07, mRNA sequence
Length = 478
Score = 34.2 bits (17), Expect = 0.29
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 94 ctcaaggtcccagccactgtt 114
||||||||||||||| |||||
Sbjct: 269 ctcaaggtcccagcctctgtt 249
>emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3)
Length = 3696
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 481 cttgaggaagacatcgc 497
|||||||||||||||||
Sbjct: 71 cttgaggaagacatcgc 55
>emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4)
Length = 3705
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 481 cttgaggaagacatcgc 497
|||||||||||||||||
Sbjct: 71 cttgaggaagacatcgc 55
>emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochrome (AP5)
Length = 1623
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 481 cttgaggaagacatcgc 497
|||||||||||||||||
Sbjct: 150 cttgaggaagacatcgc 134
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2337
Number of Sequences: 8143
Number of extensions: 2337
Number of successful extensions: 682
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 6
length of query: 1277
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1261
effective length of database: 4,572,175
effective search space: 5765512675
effective search space used: 5765512675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)