BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493944.2.2
         (2027 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816688.1|CN816688  HRO4523_F05_L09ZS5 Lib AA071E1X Aven...    90   9e-018
gb|CN820260.1|CN820260  HRO4417_D02_G03ZS5 Lib AA069E1X Aven...    36   0.12 
gb|CN815555.1|CN815555  HRO4513_A01_A01ZS5 Lib AA071E1X Aven...    34   0.47 
gb|CN816489.1|CN816489  HRO4521_C12_E23ZS5 Lib AA071E1X Aven...    34   0.47 
gb|CN816892.1|CN816892  HRO4525_H12_O23ZS5 Lib AA071E1X Aven...    34   0.47 
gb|CN821130.1|CN821130  HRO4427_H01_P01ZS5 Lib AA069E1X Aven...    34   0.47 

>gb|CN816688.1|CN816688 HRO4523_F05_L09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4523_F05_L09, mRNA sequence
          Length = 632

 Score = 89.7 bits (45), Expect = 9e-018
 Identities = 135/165 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1629 gatcgaccgatcggtcgttgagagcttcggagccgggggcaagacctgcatcctctccag 1688
            ||||||||| || || |||||||||||||| || || || || ||||||||||| || ||
Sbjct: 3    gatcgaccggtcagtggttgagagcttcggcgcgggagggaaaacctgcatcctgtcaag 62

                                                                        
Query: 1689 ggtctacccgtcgctggccatcggcaaggacgctcgcctctacgtgttcaacaacgggag 1748
            ||| ||||||||  ||||  | || || ||||| | |||  |||||||||||||||||  
Sbjct: 63   ggtgtacccgtccatggcgttagggaaagacgcgcaccttcacgtgttcaacaacggggc 122

                                                         
Query: 1749 ggcgcacgtcaaggtgtcccgtctcaccgcgtgggagatgaagaa 1793
            | || |  ||||||||||||| || ||||||||||||||||||||
Sbjct: 123  gacggatatcaaggtgtcccgcctgaccgcgtgggagatgaagaa 167



>gb|CN820260.1|CN820260 HRO4417_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4417_D02_G03, mRNA
           sequence
          Length = 302

 Score = 36.2 bits (18), Expect = 0.12
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 421 gggtcggcgacggtgctg 438
           ||||||||||||||||||
Sbjct: 3   gggtcggcgacggtgctg 20



>gb|CN815555.1|CN815555 HRO4513_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4513_A01_A01, mRNA sequence
          Length = 514

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 164 aggtgccgccgtccatc 180
           |||||||||||||||||
Sbjct: 103 aggtgccgccgtccatc 119



>gb|CN816489.1|CN816489 HRO4521_C12_E23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4521_C12_E23, mRNA sequence
          Length = 874

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 50/61 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1609 aagatatccctgagaagcctgatcgaccgatcggtcgttgagagcttcggagccgggggc 1668
            ||||||||||| ||||  || || ||||| |||| ||| |||||||| |||| ||| |||
Sbjct: 745  aagatatccctcagaactctaattgaccggtcggccgtggagagctttggaggcggtggc 804

             
Query: 1669 a 1669
            |
Sbjct: 805  a 805



>gb|CN816892.1|CN816892 HRO4525_H12_O23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4525_H12_O23, mRNA sequence
          Length = 468

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 77  tgctgctgctgttgcag 93
           |||||||||||||||||
Sbjct: 312 tgctgctgctgttgcag 328



>gb|CN821130.1|CN821130 HRO4427_H01_P01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4427_H01_P01, mRNA
           sequence
          Length = 612

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 16  ctctgtatgtgagtgag 32
           |||||||||||||||||
Sbjct: 517 ctctgtatgtgagtgag 501



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4099
Number of Sequences: 8143
Number of extensions: 4099
Number of successful extensions: 1315
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1305
Number of HSP's gapped (non-prelim): 8
length of query: 2027
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2010
effective length of database: 4,564,032
effective search space: 9173704320
effective search space used: 9173704320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)