BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493944.2.1
(2055 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816688.1|CN816688 HRO4523_F05_L09ZS5 Lib AA071E1X Aven... 98 4e-020
gb|CN816489.1|CN816489 HRO4521_C12_E23ZS5 Lib AA071E1X Aven... 42 0.002
gb|CN820260.1|CN820260 HRO4417_D02_G03ZS5 Lib AA069E1X Aven... 36 0.12
gb|CN815555.1|CN815555 HRO4513_A01_A01ZS5 Lib AA071E1X Aven... 34 0.47
gb|CN816892.1|CN816892 HRO4525_H12_O23ZS5 Lib AA071E1X Aven... 34 0.47
gb|CN819978.1|CN819978 HRO4409_D11_G21ZS5 Lib AA069E1X Aven... 34 0.47
gb|CN821130.1|CN821130 HRO4427_H01_P01ZS5 Lib AA069E1X Aven... 34 0.47
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 34 0.47
>gb|CN816688.1|CN816688 HRO4523_F05_L09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_F05_L09, mRNA sequence
Length = 632
Score = 97.6 bits (49), Expect = 4e-020
Identities = 136/165 (82%)
Strand = Plus / Minus
Query: 248 ttcttcatctcccacgcggtgagacgggacaccttgacgtgcgccctcccgttgttgaac 307
|||||||||||||||||||| || ||||||||||||| | || | |||||||||||||
Sbjct: 167 ttcttcatctcccacgcggtcaggcgggacaccttgatatccgtcgccccgttgttgaac 108
Query: 308 acgtagaggcgagcgtccttgccgatggccagcgacgggtagaccctggagaggatgcag 367
|||| ||| | ||||| || || | |||| |||||||| ||||| || |||||||||
Sbjct: 107 acgtgaaggtgcgcgtctttccctaacgccatggacgggtacacccttgacaggatgcag 48
Query: 368 gtcttgcccccggctccgaagctctcaacgaccgaccggtcgatc 412
|| || || || || |||||||||||||| || ||||||||||||
Sbjct: 47 gttttccctcccgcgccgaagctctcaaccactgaccggtcgatc 3
>gb|CN816489.1|CN816489 HRO4521_C12_E23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C12_E23, mRNA sequence
Length = 874
Score = 42.1 bits (21), Expect = 0.002
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 372 tgcccccggctccgaagctctcaacgaccgaccggtcgatcaggcttctcagggatatct 431
|||| ||| |||| |||||||| ||| |||||||||| || || |||| ||||||||||
Sbjct: 805 tgccaccgcctccaaagctctccacggccgaccggtcaattagagttctgagggatatct 746
Query: 432 t 432
|
Sbjct: 745 t 745
>gb|CN820260.1|CN820260 HRO4417_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_D02_G03, mRNA
sequence
Length = 302
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1606 cagcaccgtcgccgaccc 1623
||||||||||||||||||
Sbjct: 20 cagcaccgtcgccgaccc 3
>gb|CN815555.1|CN815555 HRO4513_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_A01_A01, mRNA sequence
Length = 514
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1864 gatggacggcggcacct 1880
|||||||||||||||||
Sbjct: 119 gatggacggcggcacct 103
>gb|CN816892.1|CN816892 HRO4525_H12_O23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_H12_O23, mRNA sequence
Length = 468
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1951 ctgcaacagcagcagca 1967
|||||||||||||||||
Sbjct: 328 ctgcaacagcagcagca 312
>gb|CN819978.1|CN819978 HRO4409_D11_G21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_D11_G21, mRNA
sequence
Length = 697
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 859 aggccactgcagcagct 875
|||||||||||||||||
Sbjct: 151 aggccactgcagcagct 135
>gb|CN821130.1|CN821130 HRO4427_H01_P01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_H01_P01, mRNA
sequence
Length = 612
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2012 ctcactcacatacagag 2028
|||||||||||||||||
Sbjct: 501 ctcactcacatacagag 517
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete sequence
Length = 16091
Score = 34.2 bits (17), Expect = 0.47
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 153 tatatatcaaaaagggaagat 173
|||||||||||||| ||||||
Sbjct: 10020 tatatatcaaaaagagaagat 10000
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4278
Number of Sequences: 8143
Number of extensions: 4278
Number of successful extensions: 1409
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 14
length of query: 2055
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2038
effective length of database: 4,564,032
effective search space: 9301497216
effective search space used: 9301497216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)