BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493751.2.1
(577 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY277385.1| Avena sativa 1,3-beta glucanase (Oglc13) gen... 50 2e-006
gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRN... 48 9e-006
emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 38 0.008
>gb|AY277385.1| Avena sativa 1,3-beta glucanase (Oglc13) gene, complete cds
Length = 3281
Score = 50.1 bits (25), Expect = 2e-006
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 106 gtacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaaggaggg 165
||||||||||||||||||||| | ||| |||||| || || ||||||||||||| |||
Sbjct: 2845 gtacacgaacctgttcgacgcgatggtggacgcggtgcacgcggcgctggagaaggcggg 2904
Query: 166 g 166
|
Sbjct: 2905 g 2905
>gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRNA, partial cds
Length = 1045
Score = 48.1 bits (24), Expect = 9e-006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaaggagggg 166
|||||||||||||||||||| | ||| |||||| || || ||||||||||||| ||||
Sbjct: 601 tacacgaacctgttcgacgcgatggtggacgcggtgcacgcggcgctggagaaggcgggg 660
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
Length = 1448
Score = 38.2 bits (19), Expect = 0.008
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 112 gaacctgttcgacgccacggtagacgc 138
||||||||||||| ||||||| |||||
Sbjct: 723 gaacctgttcgacaccacggtggacgc 749
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1082
Number of Sequences: 8143
Number of extensions: 1082
Number of successful extensions: 317
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 5
length of query: 577
length of database: 4,702,463
effective HSP length: 16
effective length of query: 561
effective length of database: 4,572,175
effective search space: 2564990175
effective search space used: 2564990175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)