BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493695.2.1
(570 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815103.1|CN815103 HRO4505_H07_O13ZS5 Lib AA071E1X Aven... 36 0.033
gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Aven... 36 0.033
gb|CN815727.1|CN815727 HRO4514_H03_O06ZS5 Lib AA071E1X Aven... 34 0.13
gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Aven... 34 0.13
gb|AF237550.1| Avena sativa receptor-like kinase extracellu... 34 0.13
gb|AF306753.1| Avena macrostachya receptor-like kinase extr... 34 0.13
>gb|CN815103.1|CN815103 HRO4505_H07_O13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_H07_O13, mRNA sequence
Length = 449
Score = 36.2 bits (18), Expect = 0.033
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 212 cggcagcggcggcggcgg 229
||||||||||||||||||
Sbjct: 39 cggcagcggcggcggcgg 22
>gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_D09_G17, mRNA sequence
Length = 450
Score = 36.2 bits (18), Expect = 0.033
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 266 cggcggcggcggcggaag 283
||||||||||||||||||
Sbjct: 55 cggcggcggcggcggaag 72
>gb|CN815727.1|CN815727 HRO4514_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_H03_O06, mRNA sequence
Length = 836
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 214 gcagcggcggcggcggc 230
|||||||||||||||||
Sbjct: 83 gcagcggcggcggcggc 67
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
Length = 683
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 264 atcggcggcggcggcgg 280
|||||||||||||||||
Sbjct: 23 atcggcggcggcggcgg 39
>gb|AF237550.1| Avena sativa receptor-like kinase extracellular domain precursor
RLK10A2 (rlk10a2) gene, partial cds
Length = 878
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 219 ggcggcggcggccgtca 235
|||||||||||||||||
Sbjct: 620 ggcggcggcggccgtca 636
>gb|AF306753.1| Avena macrostachya receptor-like kinase extracellular domain
LRKA13A5 (lrka13a5) gene, partial cds
Length = 883
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 219 ggcggcggcggccgtca 235
|||||||||||||||||
Sbjct: 625 ggcggcggcggccgtca 641
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1684
Number of Sequences: 8143
Number of extensions: 1684
Number of successful extensions: 678
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 23
length of query: 570
length of database: 4,702,463
effective HSP length: 16
effective length of query: 554
effective length of database: 4,572,175
effective search space: 2532984950
effective search space used: 2532984950
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)