BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493535.2.1
         (580 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815727.1|CN815727  HRO4514_H03_O06ZS5 Lib AA071E1X Aven...    36   0.033
gb|AF140553.1|AF140553  Avena sativa DNA-binding protein WRK...    34   0.13 
emb|AX458011.1|  Sequence 3 from Patent WO0246387                  34   0.13 

>gb|CN815727.1|CN815727 HRO4514_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4514_H03_O06, mRNA sequence
          Length = 836

 Score = 36.2 bits (18), Expect = 0.033
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 273 cagaagcagcggcggcgg 290
           ||||||||||||||||||
Sbjct: 88  cagaagcagcggcggcgg 71



>gb|AF140553.1|AF140553 Avena sativa DNA-binding protein WRKY3 (wrky3) mRNA, complete cds
          Length = 1206

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 434 ggacagcagcagcagca 450
           |||||||||||||||||
Sbjct: 219 ggacagcagcagcagca 235



>emb|AX458011.1| Sequence 3 from Patent WO0246387
          Length = 1323

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 406 ccgccaccgccaccggc 422
           |||||||||||||||||
Sbjct: 14  ccgccaccgccaccggc 30



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1632
Number of Sequences: 8143
Number of extensions: 1632
Number of successful extensions: 542
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 6
length of query: 580
length of database: 4,702,463
effective HSP length: 16
effective length of query: 564
effective length of database: 4,572,175
effective search space: 2578706700
effective search space used: 2578706700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)