BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820358.1|CN820358 HRO4418_D12_G24ZS5 Lib AA069E1X Aven... 42 0.001
gb|CN818455.1|CN818455 HRO4460_E06_I12ZS5 Lib AA070E1X Aven... 40 0.004
gb|CN815077.1|CN815077 HRO4505_F02_K03ZS5 Lib AA071E1X Aven... 34 0.24
gb|CN819764.1|CN819764 HRO4403_G12_N23ZS5 Lib AA069E1X Aven... 34 0.24
gb|CN819789.1|CN819789 HRO4404_B01_D02ZS5 Lib AA069E1X Aven... 34 0.24
gb|CN820668.1|CN820668 HRO4416_A08_B16ZS5 Lib AA069E1X Aven... 34 0.24
>gb|CN820358.1|CN820358 HRO4418_D12_G24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_D12_G24, mRNA
sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcct 143
|||||||||||||||||| ||||||
Sbjct: 220 tcttcttcctcctcctcctcctcct 196
>gb|CN818455.1|CN818455 HRO4460_E06_I12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_E06_I12, mRNA sequence
Length = 759
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 183 tcctcctcctccccctcctc 202
>gb|CN815077.1|CN815077 HRO4505_F02_K03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_F02_K03, mRNA sequence
Length = 394
Score = 34.2 bits (17), Expect = 0.24
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| || |||||||||||| |||||||
Sbjct: 165 ctcctcctcctcctcctcctcctcctcctcctc 133
Score = 34.2 bits (17), Expect = 0.24
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| || |||||||||||| |||||||
Sbjct: 162 ctcctcctcctcctcctcctcctcctcctcctc 130
Score = 34.2 bits (17), Expect = 0.24
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| || |||||||||||| |||||||
Sbjct: 159 ctcctcctcctcctcctcctcctcctcctcctc 127
Score = 34.2 bits (17), Expect = 0.24
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| || |||||||||||| |||||||
Sbjct: 156 ctcctcctcctcctcctcctcctcctcctcctc 124
Score = 34.2 bits (17), Expect = 0.24
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| || |||||||||||| |||||||
Sbjct: 153 ctcctcctcctcctcctcctcctcctcctcctc 121
Score = 34.2 bits (17), Expect = 0.24
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| || |||||||||||| |||||||
Sbjct: 150 ctcctcctcctcctcctcctcctcctcctcctc 118
>gb|CN819764.1|CN819764 HRO4403_G12_N23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_G12_N23, mRNA
sequence
Length = 681
Score = 34.2 bits (17), Expect = 0.24
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 830 attcctctgcagaagaagcaatatc 854
|||| ||||| ||||||||||||||
Sbjct: 298 attcttctgctgaagaagcaatatc 322
>gb|CN819789.1|CN819789 HRO4404_B01_D02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_B01_D02, mRNA
sequence
Length = 538
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctc 135
|||||||||||||||||
Sbjct: 86 tcttcttcctcctcctc 70
>gb|CN820668.1|CN820668 HRO4416_A08_B16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_A08_B16, mRNA
sequence
Length = 381
Score = 34.2 bits (17), Expect = 0.24
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||| || |||||||||||| |||||||
Sbjct: 119 ctcctcctcctcctcctcctcctcctcctcctc 151
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2286
Number of Sequences: 8143
Number of extensions: 2286
Number of successful extensions: 652
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 14
length of query: 1061
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1045
effective length of database: 4,572,175
effective search space: 4777922875
effective search space used: 4777922875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)