BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2485885.2.1
         (1063 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820825.1|CN820825  HRO4420_C10_F20ZS5 Lib AA069E1X Aven...    38   0.016
gb|CN814744.1|CN814744  HRO4502_A07_A14ZS5 Lib AA071E1X Aven...    36   0.062
gb|CN815877.1|CN815877  HRO4511_E02_J03ZS5 Lib AA071E1X Aven...    36   0.062
gb|CN815969.1|CN815969  HRO4515_D12_H23ZS5 Lib AA071E1X Aven...    36   0.062
gb|CN816144.1|CN816144  HRO4517_E02_I03ZS5 Lib AA071E1X Aven...    36   0.062
gb|CN819652.1|CN819652  HRO4402_F04_K08ZS5 Lib AA069E1X Aven...    36   0.062
gb|CN818705.1|CN818705  HRO4467_H10_O19ZS5 Lib AA070E1X Aven...    34   0.24 

>gb|CN820825.1|CN820825 HRO4420_C10_F20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4420_C10_F20, mRNA
           sequence
          Length = 621

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 406 ttcgtcacgcactgtggctggaactcg 432
           |||||||||||||| || |||||||||
Sbjct: 111 ttcgtcacgcactgcggttggaactcg 137



>gb|CN814744.1|CN814744 HRO4502_A07_A14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_A07_A14, mRNA sequence
          Length = 776

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 138 gagctccgtggtgttcct 155
           ||||||||||||||||||
Sbjct: 221 gagctccgtggtgttcct 204



>gb|CN815877.1|CN815877 HRO4511_E02_J03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4511_E02_J03, mRNA sequence
          Length = 637

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 138 gagctccgtggtgttcct 155
           ||||||||||||||||||
Sbjct: 320 gagctccgtggtgttcct 303



>gb|CN815969.1|CN815969 HRO4515_D12_H23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_D12_H23, mRNA sequence
          Length = 734

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 138 gagctccgtggtgttcct 155
           ||||||||||||||||||
Sbjct: 503 gagctccgtggtgttcct 486



>gb|CN816144.1|CN816144 HRO4517_E02_I03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4517_E02_I03, mRNA sequence
          Length = 361

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 138 gagctccgtggtgttcct 155
           ||||||||||||||||||
Sbjct: 123 gagctccgtggtgttcct 106



>gb|CN819652.1|CN819652 HRO4402_F04_K08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4402_F04_K08, mRNA
           sequence
          Length = 593

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 138 gagctccgtggtgttcct 155
           ||||||||||||||||||
Sbjct: 341 gagctccgtggtgttcct 324



>gb|CN818705.1|CN818705 HRO4467_H10_O19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4467_H10_O19, mRNA sequence
          Length = 527

 Score = 34.2 bits (17), Expect = 0.24
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 569 tcgtggaggcgaccgag 585
           |||||||||||||||||
Sbjct: 50  tcgtggaggcgaccgag 66



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2108
Number of Sequences: 8143
Number of extensions: 2108
Number of successful extensions: 621
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 7
length of query: 1063
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1047
effective length of database: 4,572,175
effective search space: 4787067225
effective search space used: 4787067225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)