BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478337.2.1
(729 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 46 4e-005
gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Aven... 36 0.042
gb|CN816292.1|CN816292 HRO4519_B03_D05ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN819575.1|CN819575 HRO4401_G05_M09ZS5 Lib AA069E1X Aven... 34 0.17
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 46.1 bits (23), Expect = 4e-005
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
||||||| |||||||||||||||| | |||||||||||
Sbjct: 209 gggatgatgttgttggcgacgagctgcttgccggagtcg 171
>gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_C09_F18, mRNA sequence
Length = 377
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 674 gtcgccgtcgccgtcctc 691
||||||||||||||||||
Sbjct: 179 gtcgccgtcgccgtcctc 162
>gb|CN816292.1|CN816292 HRO4519_B03_D05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_B03_D05, mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 301 cattttcttcttcttct 317
|||||||||||||||||
Sbjct: 78 cattttcttcttcttct 62
>gb|CN819575.1|CN819575 HRO4401_G05_M09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_G05_M09, mRNA
sequence
Length = 690
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 106 cacacacaaacacagac 122
|||||||||||||||||
Sbjct: 515 cacacacaaacacagac 499
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2094
Number of Sequences: 8143
Number of extensions: 2094
Number of successful extensions: 672
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 18
length of query: 729
length of database: 4,702,463
effective HSP length: 16
effective length of query: 713
effective length of database: 4,572,175
effective search space: 3259960775
effective search space used: 3259960775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)