BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2478337.2.1
         (729 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820496.1|CN820496  HRO4413_A07_A13ZS5 Lib AA069E1X Aven...    46   4e-005
gb|CN815496.1|CN815496  HRO4512_C09_F18ZS5 Lib AA071E1X Aven...    36   0.042
gb|CN816292.1|CN816292  HRO4519_B03_D05ZS5 Lib AA071E1X Aven...    34   0.17 
gb|CN819575.1|CN819575  HRO4401_G05_M09ZS5 Lib AA069E1X Aven...    34   0.17 
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
           sequence
          Length = 642

 Score = 46.1 bits (23), Expect = 4e-005
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 501 gggatgacgttgttggcgacgagcaccctgccggagtcg 539
           ||||||| ||||||||||||||||  | |||||||||||
Sbjct: 209 gggatgatgttgttggcgacgagctgcttgccggagtcg 171
>gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4512_C09_F18, mRNA sequence
          Length = 377

 Score = 36.2 bits (18), Expect = 0.042
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 674 gtcgccgtcgccgtcctc 691
           ||||||||||||||||||
Sbjct: 179 gtcgccgtcgccgtcctc 162
>gb|CN816292.1|CN816292 HRO4519_B03_D05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4519_B03_D05, mRNA sequence
          Length = 538

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 301 cattttcttcttcttct 317
           |||||||||||||||||
Sbjct: 78  cattttcttcttcttct 62
>gb|CN819575.1|CN819575 HRO4401_G05_M09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4401_G05_M09, mRNA
           sequence
          Length = 690

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 106 cacacacaaacacagac 122
           |||||||||||||||||
Sbjct: 515 cacacacaaacacagac 499
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2094
Number of Sequences: 8143
Number of extensions: 2094
Number of successful extensions: 672
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 18
length of query: 729
length of database: 4,702,463
effective HSP length: 16
effective length of query: 713
effective length of database: 4,572,175
effective search space: 3259960775
effective search space used: 3259960775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)