BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Aven... 149 8e-036
>gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_E01_J02, mRNA sequence
Length = 229
Score = 149 bits (75), Expect = 8e-036
Identities = 99/107 (92%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 120 gtgaacctgatcatcactgactactgcatgcccggcatgacaggatacgacctgctcaag 179
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcat 548
||||||||||| || |||||||||||||| |||||||| || |||||
Sbjct: 180 aagatcaaggaatcatcgtctctcagagacatcccggttgtcatcat 226
Score = 81.8 bits (41), Expect = 1e-015
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacct 145
||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 120 gtgaacctgatcatcactgactactgcatgcccggcatgacaggatacgacct 172
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3880
Number of Sequences: 8143
Number of extensions: 3880
Number of successful extensions: 1219
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 2
length of query: 1343
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1327
effective length of database: 4,572,175
effective search space: 6067276225
effective search space used: 6067276225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)