BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.1
(1115 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 414 e-116
gb|CN816997.1|CN816997 HRO4527_B04_D07ZS5 Lib AA071E1X Aven... 54 3e-007
gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Aven... 44 3e-004
gb|AA231642.1|AA231642 CDO20.F cDNA from oat Avena sativa c... 40 0.004
gb|BE439040.1|BE439040 CDO20_WHE2C0041F ITEC CDO Oat cDNA L... 40 0.004
gb|BE439080.1|BE439080 CDO20_WHE2C0042F ITEC CDO Oat cDNA L... 40 0.004
gb|BE439366.1|BE439366 CDO1090_WHE05F10R ITEC CDO Oat cDNA ... 38 0.016
gb|CN180767.1|CN180767 As02_cdo1090_C ITEC CDO Oat cDNA Lib... 38 0.016
gb|CN816040.1|CN816040 HRO4516_C03_F06ZS5 Lib AA071E1X Aven... 38 0.016
gb|CN821468.1|CN821468 HRO4425_F10_K19ZS5 Lib AA069E1X Aven... 38 0.016
gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Aven... 34 0.26
gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Aven... 34 0.26
gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Aven... 34 0.26
gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Aven... 34 0.26
gb|CN819684.1|CN819684 HRO4402_H12_O24ZS5 Lib AA069E1X Aven... 34 0.26
gb|CN819840.1|CN819840 HRO4404_F10_L20ZS5 Lib AA069E1X Aven... 34 0.26
gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Aven... 34 0.26
gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Aven... 34 0.26
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 414 bits (209), Expect = e-116
Identities = 341/385 (88%)
Strand = Plus / Minus
Query: 250 ttcacttgacgcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcga 309
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 396 ttcacttggcgcggcggcagagtgtgatgccgtcgccgacggggagctggcagatctcga 337
Query: 310 cgcggtcgtcggcggcgagcgccttgttgaggacgagcacgaagtcgcggtagaagcgga 369
||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 336 cgcggtcgtcggcggcgagggccttgttgagctcgaggacgaagtcgcggtagtagcgga 277
Query: 370 tgtacttgcgcatgggcgcgtcgtcggggagcacgacggagccgttccacagcgtgttgt 429
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 276 tgtacttgcgcatgggcgcgtcggcggggagcacgacggagccgttccagagcgtgttgt 217
Query: 430 cgtagccgatgaggccgcccagcttcaccagcttcagcagccgctcgtggtagttgaggt 489
|||| || | |||||||| | | | || ||||||| || |||| ||||||||||||||
Sbjct: 216 cgtatcctagcaggccgccgaccctgacgagcttcatgaggcgctggtggtagttgaggt 157
Query: 490 agttgtccttgtcggcgtccacgaagacgaagtcgaacgacccgtggttcttctcctccg 549
||||||||||||| ||||| ||||||||||||||||| | |||||||| ||| |||
Sbjct: 156 agttgtccttgtccgcgtcgacgaagacgaagtcgaaggtgccgtggttggcctcgtcct 97
Query: 550 cgatgaggtcgtcgaggacggggagcgcgggaccctcgcggaagtcgatcttgtgggcga 609
||| || |||| || ||||| |||||||| ||||||||||||||||||||||| || |
Sbjct: 96 cgagcagcgcgtccagcacgggcagcgcggggccctcgcggaagtcgatcttgtgcgcca 37
Query: 610 cgccggccttctcgatgcagggcag 634
||||||||||||||||||| |||||
Sbjct: 36 cgccggccttctcgatgcacggcag 12
>gb|CN816997.1|CN816997 HRO4527_B04_D07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_B04_D07, mRNA sequence
Length = 423
Score = 54.0 bits (27), Expect = 3e-007
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 261 cggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtcg 320
|||||||| || |||| ||||||| ||||||||||||| | ||||||||| ||||||
Sbjct: 109 cggcggcatagcgtgatgccgtcggcgacggggagctgtacgggctcgacgcgctcgtcg 50
Query: 321 gcggcga 327
|||||||
Sbjct: 49 gcggcga 43
>gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H08_O16, mRNA sequence
Length = 372
Score = 44.1 bits (22), Expect = 3e-004
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 264 cggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcggtcgtcggcg 323
||||||| |||||| || ||| ||| || ||||||||||| ||||| ||| |||||||
Sbjct: 114 cggcagatggtgaccccatcggcgatggcgagctggcagacctcgatgcgcgggtcggcg 55
Query: 324 gcgagc 329
||||||
Sbjct: 54 gcgagc 49
>gb|AA231642.1|AA231642 CDO20.F cDNA from oat Avena sativa cDNA clone CDO20, mRNA sequence
Length = 371
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 765 agcttgatgagcatgttcag 784
||||||||||||||||||||
Sbjct: 312 agcttgatgagcatgttcag 293
>gb|BE439040.1|BE439040 CDO20_WHE2C0041F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO20_WHE2C0041, mRNA sequence
Length = 313
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 765 agcttgatgagcatgttcag 784
||||||||||||||||||||
Sbjct: 279 agcttgatgagcatgttcag 260
>gb|BE439080.1|BE439080 CDO20_WHE2C0042F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO20_WHE2C0042, mRNA sequence
Length = 290
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 765 agcttgatgagcatgttcag 784
||||||||||||||||||||
Sbjct: 284 agcttgatgagcatgttcag 265
>gb|BE439366.1|BE439366 CDO1090_WHE05F10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1090_WHE05, mRNA sequence
Length = 273
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 737 gatctccatggtcttcttg 755
|||||||||||||||||||
Sbjct: 183 gatctccatggtcttcttg 165
>gb|CN180767.1|CN180767 As02_cdo1090_C ITEC CDO Oat cDNA Library Avena sativa cDNA clone
As02_cdo1090, mRNA sequence
Length = 678
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 737 gatctccatggtcttcttg 755
|||||||||||||||||||
Sbjct: 181 gatctccatggtcttcttg 163
>gb|CN816040.1|CN816040 HRO4516_C03_F06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_C03_F06, mRNA sequence
Length = 720
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 737 gatctccatggtcttcttg 755
|||||||||||||||||||
Sbjct: 171 gatctccatggtcttcttg 153
>gb|CN821468.1|CN821468 HRO4425_F10_K19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_F10_K19, mRNA
sequence
Length = 857
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 737 gatctccatggtcttcttg 755
|||||||||||||||||||
Sbjct: 64 gatctccatggtcttcttg 46
>gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B05_C10, mRNA sequence
Length = 838
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 91 aagaaggaagaggagga 107
|||||||||||||||||
Sbjct: 548 aagaaggaagaggagga 564
>gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_D03_G05, mRNA sequence
Length = 636
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 91 aagaaggaagaggagga 107
|||||||||||||||||
Sbjct: 327 aagaaggaagaggagga 343
>gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H06_O11, mRNA sequence
Length = 856
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 91 aagaaggaagaggagga 107
|||||||||||||||||
Sbjct: 626 aagaaggaagaggagga 642
>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
sequence
Length = 769
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 85 attcccaagaaggaaga 101
|||||||||||||||||
Sbjct: 390 attcccaagaaggaaga 406
>gb|CN819684.1|CN819684 HRO4402_H12_O24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_H12_O24, mRNA
sequence
Length = 604
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 494 gtccttgtcggcgtcca 510
|||||||||||||||||
Sbjct: 201 gtccttgtcggcgtcca 185
>gb|CN819840.1|CN819840 HRO4404_F10_L20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_F10_L20, mRNA
sequence
Length = 513
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 494 gtccttgtcggcgtcca 510
|||||||||||||||||
Sbjct: 123 gtccttgtcggcgtcca 107
>gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_E12_J23, mRNA
sequence
Length = 807
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 91 aagaaggaagaggagga 107
|||||||||||||||||
Sbjct: 325 aagaaggaagaggagga 309
>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
sequence
Length = 839
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 85 attcccaagaaggaaga 101
|||||||||||||||||
Sbjct: 384 attcccaagaaggaaga 400
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2890
Number of Sequences: 8143
Number of extensions: 2890
Number of successful extensions: 755
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 23
length of query: 1115
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1099
effective length of database: 4,572,175
effective search space: 5024820325
effective search space used: 5024820325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)