BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815304.1|CN815304 HRO4508_B12_D24ZS5 Lib AA071E1X Aven... 192 3e-049
gb|CN818823.1|CN818823 HRO4473_G10_XXXZS5 Lib AA070E1X Aven... 36 0.039
gb|AA231725.1|AA231725 CDO938.F cDNA from oat Avena sativa ... 34 0.16
gb|CN818895.1|CN818895 HRO4473_C11_XXXZS5 Lib AA070E1X Aven... 34 0.16
>gb|CN815304.1|CN815304 HRO4508_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_B12_D24, mRNA sequence
Length = 556
Score = 192 bits (97), Expect = 3e-049
Identities = 151/169 (89%)
Strand = Plus / Plus
Query: 203 aagtatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggc 262
||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 16 aagtatattccgttctatggaggagcagaataccatgattatcatcactatgttggaggc 75
Query: 263 cagagccaaagcaattttgcttctgttttcacttactgtgattacttatatggcactgac 322
|| ||||| |||||||||||||| |||||||| |||||||||||| |||| || ||||||
Sbjct: 76 caaagccagagcaattttgcttccgttttcacgtactgtgattacctatacgggactgac 135
Query: 323 aaaggttacagattccacaaaacatacctagcaaagctgaaggatctgg 371
| ||||||||||||||| || | |||||||||||| ||||||| ||||
Sbjct: 136 agaggttacagattccataaggcttacctagcaaagttgaaggacctgg 184
>gb|CN818823.1|CN818823 HRO4473_G10_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_G10_XXX, mRNA sequence
Length = 507
Score = 36.2 bits (18), Expect = 0.039
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 348 acctagcaaagctgaaggatct 369
|||| |||||||||||||||||
Sbjct: 54 acctggcaaagctgaaggatct 75
>gb|AA231725.1|AA231725 CDO938.F cDNA from oat Avena sativa cDNA clone CDO938, mRNA
sequence
Length = 292
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 330 acagattccacaaaaca 346
|||||||||||||||||
Sbjct: 127 acagattccacaaaaca 143
>gb|CN818895.1|CN818895 HRO4473_C11_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_C11_XXX, mRNA sequence
Length = 741
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 330 acagattccacaaaaca 346
|||||||||||||||||
Sbjct: 700 acagattccacaaaaca 684
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1620
Number of Sequences: 8143
Number of extensions: 1620
Number of successful extensions: 428
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 4
length of query: 682
length of database: 4,702,463
effective HSP length: 16
effective length of query: 666
effective length of database: 4,572,175
effective search space: 3045068550
effective search space used: 3045068550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)