BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448387.2.1
(919 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Aven... 70 4e-012
gb|CN816532.1|CN816532 HRO4521_G12_M23ZS5 Lib AA071E1X Aven... 38 0.013
>gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D03_H05, mRNA sequence
Length = 633
Score = 69.9 bits (35), Expect = 4e-012
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 674 aggatggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttg 733
|||| |||||| ||||| || || || ||||||||||||||||||||||||| |||||||
Sbjct: 118 aggagggcctcgagctccgccggcgccacctggaagcccttgtacttgatgatctccttg 59
Query: 734 atgcggtccacgatgaacacgtcgccgtcgtcgtc 768
| | ||| |||||||| | ||| ||||||||||
Sbjct: 58 agcctgtcgacgatgaagatctcgtcgtcgtcgtc 24
>gb|CN816532.1|CN816532 HRO4521_G12_M23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G12_M23, mRNA sequence
Length = 475
Score = 38.2 bits (19), Expect = 0.013
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 251 atgcactagtttggagtac 269
|||||||||||||||||||
Sbjct: 310 atgcactagtttggagtac 328
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2141
Number of Sequences: 8143
Number of extensions: 2141
Number of successful extensions: 646
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 6
length of query: 919
length of database: 4,702,463
effective HSP length: 16
effective length of query: 903
effective length of database: 4,572,175
effective search space: 4128674025
effective search space used: 4128674025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)