BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448385.2.9
(708 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816419.1|CN816419 HRO4520_E07_J14ZS5 Lib AA071E1X Aven... 254 9e-068
gb|CN816505.1|CN816505 HRO4521_E08_I15ZS5 Lib AA071E1X Aven... 139 4e-033
>gb|CN816419.1|CN816419 HRO4520_E07_J14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_E07_J14, mRNA sequence
Length = 482
Score = 254 bits (128), Expect = 9e-068
Identities = 217/244 (88%), Gaps = 2/244 (0%)
Strand = Plus / Plus
Query: 286 gccatccgtaagtgtgcccgtgt-tcagctggtgaagaatggaaagaagattgctgcctt 344
||||||| | ||||||| ||||| |||||||| ||||||||| ||||| |||||||||||
Sbjct: 21 gccatccctcagtgtgctcgtgtgtcagctggagaagaatgggaagaacattgctgcctt 80
Query: 345 tgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctgg 404
|||||| ||||||||||||| |||| ||| |||||||| ||||||||| ||||||||||
Sbjct: 81 tgtgccccatgatggttgccttaacttcattgaggagaacgatgaggtgctgattgctgg 140
Query: 405 -atttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgtta 463
||| | ||| |||| || ||||||||||| |||||||||||||||||| ||||||| |
Sbjct: 141 cattctggcgtcaggggcacgctgtgggagatattcctggtgtcaggttctaggttgtca 200
Query: 464 aggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtctt 523
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 201 aggtatctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcccagatctt 260
Query: 524 agat 527
||||
Sbjct: 261 agat 264
>gb|CN816505.1|CN816505 HRO4521_E08_I15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_E08_I15, mRNA sequence
Length = 758
Score = 139 bits (70), Expect = 4e-033
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 445 gtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaag 504
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtcaggttcaaggttgtcaaggtatctggtgtgtcgctgcttgcactcttcaaggagaag 638
Query: 505 aaggagaagccaaggtcttaga 526
||||||||||| ||||||||||
Sbjct: 639 aaggagaagcccaggtcttaga 660
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1956
Number of Sequences: 8143
Number of extensions: 1956
Number of successful extensions: 643
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 2
length of query: 708
length of database: 4,702,463
effective HSP length: 16
effective length of query: 692
effective length of database: 4,572,175
effective search space: 3163945100
effective search space used: 3163945100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)