BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441327.2.1
(884 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA ... 90 4e-018
gb|AA231926.1|AA231926 CDO1173.F cDNA from oat Avena sativa... 34 0.20
gb|CN816928.1|CN816928 HRO4526_D01_G02ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN817023.1|CN817023 HRO4527_D07_H13ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN819881.1|CN819881 HRO4407_C05_F09ZS5 Lib AA069E1X Aven... 34 0.20
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 34 0.20
>gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1510_WHE05H09, mRNA sequence
Length = 237
Score = 89.7 bits (45), Expect = 4e-018
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 158 cgacaagagcgagcttctcctcagctccaaccccgtgctcaagaaggtgcccgtgctcat 217
||||||| ||||||| ||||||| | |||||| |||| |||||||||||||||||||||
Sbjct: 133 cgacaagggcgagctcctcctcaagtacaacccggtgcacaagaaggtgcccgtgctcat 192
Query: 218 ccaccacggcaagcccgtctgcgagtcccagatcatc 254
|||| ||||| ||| |||| |||||||||||||||
Sbjct: 193 ccacaacggcgtgccgctctgtgagtcccagatcatc 229
>gb|AA231926.1|AA231926 CDO1173.F cDNA from oat Avena sativa cDNA clone CDO1173, mRNA
sequence
Length = 174
Score = 34.2 bits (17), Expect = 0.20
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 710 cgtatttggcctgccgccgct 730
|||||||||||||| ||||||
Sbjct: 131 cgtatttggcctgcagccgct 151
>gb|CN816928.1|CN816928 HRO4526_D01_G02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4526_D01_G02, mRNA sequence
Length = 615
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13 cggcacgaggcagcagc 29
|||||||||||||||||
Sbjct: 3 cggcacgaggcagcagc 19
>gb|CN817023.1|CN817023 HRO4527_D07_H13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D07_H13, mRNA sequence
Length = 651
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27 agctagctagctagcat 43
|||||||||||||||||
Sbjct: 560 agctagctagctagcat 576
>gb|CN819881.1|CN819881 HRO4407_C05_F09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C05_F09, mRNA
sequence
Length = 807
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 754 gtttcttttcttttttt 770
|||||||||||||||||
Sbjct: 573 gtttcttttcttttttt 589
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
sequence
Length = 16091
Score = 34.2 bits (17), Expect = 0.20
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 394 gcaggacggcggaggagatggcgga 418
||||| |||||| ||||||||||||
Sbjct: 857 gcagggcggcggtggagatggcgga 833
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3420
Number of Sequences: 8143
Number of extensions: 3420
Number of successful extensions: 1094
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 11
length of query: 884
length of database: 4,702,463
effective HSP length: 16
effective length of query: 868
effective length of database: 4,572,175
effective search space: 3968647900
effective search space used: 3968647900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)