BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.2
(1019 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF084005.1|AF084005 Avena fatua ras-like small monomeric... 809 0.0
gb|CN815005.1|CN815005 HRO4504_G12_N24ZS5 Lib AA071E1X Aven... 452 e-127
gb|CN816959.1|CN816959 HRO4526_G01_M02ZS5 Lib AA071E1X Aven... 34 0.23
>gb|AF084005.1|AF084005 Avena fatua ras-like small monomeric GTP-binding protein (SAR1)
mRNA, complete cds
Length = 801
Score = 809 bits (408), Expect = 0.0
Identities = 546/592 (92%)
Strand = Plus / Minus
Query: 264 cgagggccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttg 323
|||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 753 cgagagccctaattgatgtactgggagacccacttgaacccatcaccatagcccatcttg 694
Query: 324 cgaacaacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgacc 383
|| ||||||||||||||||| |||||||| || |||||||||||||| | |||| |||||
Sbjct: 693 cggacaacactgcacatgaacacctcaagaggccggacattggagtcacaaaggctgacc 634
Query: 384 ttgcccttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagag 443
||||||||||| ||||||||| |||||||||||| ||||||||| ||||| |||||||||
Sbjct: 633 ttgcccttcccagttgtgaagctgctaaggcctaagtgataccgcagctcttcttcagag 574
Query: 444 gcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaa 503
||||||||||||||||||||||| |||||||| ||||||||||| || || |||| |||
Sbjct: 573 gcagcatatgggatatcaatcttattgccaagaatgagaaatgggacgtttgccagggaa 514
Query: 504 tcatcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatat 563
|||||||| |||||||||||||||||||| || ||||||||||| |||||||| || |||
Sbjct: 513 tcatcagaaaggagagcatcgagctcctttttcgattcagcaaagcgctccttgtcgtat 454
Query: 564 gcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgc 623
|||||||||| ||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 453 gcatctaccaagtatactacagcatcaaccttagcgtagtaatctttccagactcggcga 394
Query: 624 gcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcc 683
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 393 gcgatctggtggcctccgaggtcgaaggctttgaacttgatcttgccgatgctgagctcc 334
Query: 684 tccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtgg 743
|||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 333 tccgacgttgggtgctgcgtgggctggtgctgcacgagccgctcgtccttgagcatgtgg 274
Query: 744 agcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgc 803
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 273 aggagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttagcctccttctgc 214
Query: 804 cacaggccgagggaggccagcaccccgtagaaccagtcccagaggaacatct 855
||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 213 cacaggccgagcgaggccagcaccccgtagaaccagtcccataggaacatct 162
>gb|CN815005.1|CN815005 HRO4504_G12_N24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_G12_N24, mRNA sequence
Length = 633
Score = 452 bits (228), Expect = e-127
Identities = 309/336 (91%)
Strand = Plus / Minus
Query: 269 gccctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaac 328
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 356 gccctacttgatgtactgggagacccacttgaacccatcaccatagcccatcttgcggac 297
Query: 329 aacactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcc 388
||||||||||||||| |||||||| || |||||||||||||| |||||| ||||||||||
Sbjct: 296 aacactgcacatgaacacctcaagaggccggacattggagtcaccaaggctgaccttgcc 237
Query: 389 cttcccggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagc 448
|||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct: 236 cttcccagttgtgaagttgctaaggcctaagtgataccgcagctcttcttcagaggcagc 177
Query: 449 atatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatc 508
|||||||||||||||||| |||||||| ||||||||||| || || |||| ||||||||
Sbjct: 176 atatgggatatcaatcttattgccaagaatgagaaatgggacgtttgccagggaatcatc 117
Query: 509 agacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatc 568
||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct: 116 agaaaggagagcatcgagctcctttttcgattcagcaaagcgctccttgtcgtatgcatc 57
Query: 569 taccaggtatactacagcatcaacctttgcgtagta 604
||||| ||||||||||||||||||||| ||||||||
Sbjct: 56 taccaagtatactacagcatcaaccttagcgtagta 21
>gb|CN816959.1|CN816959 HRO4526_G01_M02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G01_M02, mRNA sequence
Length = 694
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 490 cattggccaaagaatca 506
|||||||||||||||||
Sbjct: 413 cattggccaaagaatca 397
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2781
Number of Sequences: 8143
Number of extensions: 2781
Number of successful extensions: 695
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 6
length of query: 1019
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1003
effective length of database: 4,572,175
effective search space: 4585891525
effective search space used: 4585891525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)