BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.1
(643 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815005.1|CN815005 HRO4504_G12_N24ZS5 Lib AA071E1X Aven... 438 e-123
gb|AF084005.1|AF084005 Avena fatua ras-like small monomeric... 428 e-120
>gb|CN815005.1|CN815005 HRO4504_G12_N24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_G12_N24, mRNA sequence
Length = 633
Score = 438 bits (221), Expect = e-123
Identities = 311/341 (91%)
Strand = Plus / Minus
Query: 288 caagggccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttg 347
|||| ||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct: 361 caagagccctacttgatgtactgggagacccacttgaacccatcaccatagcccatcttg 302
Query: 348 cgaacaacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgacc 407
|| ||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||
Sbjct: 301 cggacaacactgcacatgaacacctcaagaggccggacattggagtcaccaaggctgacc 242
Query: 408 ttgcccttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagag 467
||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 241 ttgcccttcccagttgtgaagttgctaaggcctaagtgataccgcagctcttcttcagag 182
Query: 468 gcagcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaa 527
|||||||| |||||||||||||| |||||||| ||||||||||| || ||||||| ||||
Sbjct: 181 gcagcatatgggatatcaatcttattgccaagaatgagaaatgggacgtttgccagggaa 122
Query: 528 tcatctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatac 587
||||| || |||||||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 121 tcatcagaaaggagagcatcgagctcctttttcgattcagcaaagcgctccttgtcgtat 62
Query: 588 gcatctaccaggtatactacagcatcaacctttgcgtagta 628
|||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 61 gcatctaccaagtatactacagcatcaaccttagcgtagta 21
>gb|AF084005.1|AF084005 Avena fatua ras-like small monomeric GTP-binding protein (SAR1)
mRNA, complete cds
Length = 801
Score = 428 bits (216), Expect = e-120
Identities = 315/348 (90%)
Strand = Plus / Minus
Query: 293 gccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaac 352
|||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct: 748 gccctaattgatgtactgggagacccacttgaacccatcaccatagcccatcttgcggac 689
Query: 353 aacactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcc 412
||||||||||||||| |||||||| ||||||||||||||||| | |||| ||||||||||
Sbjct: 688 aacactgcacatgaacacctcaagaggccggacattggagtcacaaaggctgaccttgcc 629
Query: 413 cttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagc 472
|||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 628 cttcccagttgtgaagctgctaaggcctaagtgataccgcagctcttcttcagaggcagc 569
Query: 473 atacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatc 532
||| |||||||||||||| |||||||| ||||||||||| || ||||||| |||||||||
Sbjct: 568 atatgggatatcaatcttattgccaagaatgagaaatgggacgtttgccagggaatcatc 509
Query: 533 tgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatc 592
|| |||||||| || ||||||||||| ||||||||||| |||||||| || || |||||
Sbjct: 508 agaaaggagagcatcgagctcctttttcgattcagcaaagcgctccttgtcgtatgcatc 449
Query: 593 taccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 448 taccaagtatactacagcatcaaccttagcgtagtaatctttccagac 401
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1630
Number of Sequences: 8143
Number of extensions: 1630
Number of successful extensions: 375
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 5
length of query: 643
length of database: 4,702,463
effective HSP length: 16
effective length of query: 627
effective length of database: 4,572,175
effective search space: 2866753725
effective search space used: 2866753725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)