BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440918.2.1
         (1469 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815631.1|CN815631  HRO4513_G09_M17ZS5 Lib AA071E1X Aven...    34   0.34 
gb|CN818358.1|CN818358  HRO4469_F03_L05ZS5 Lib AA070E1X Aven...    34   0.34 
gb|CN821245.1|CN821245  HRO4423_B06_D11ZS5 Lib AA069E1X Aven...    34   0.34 
gb|CN821589.1|CN821589  HRO4408_A07_B14Z Lib AA069E1X Avena ...    34   0.34 
gb|CN821615.1|CN821615  HRO4408_C09_F18ZS5 Lib AA069E1X Aven...    34   0.34 
gb|AF078871.1|AF078871  Avena sativa cultivar Ogle peroxidas...    34   0.34 
gb|AF078872.1|AF078872  Avena sativa cultivar Ogle peroxidas...    34   0.34 

>gb|CN815631.1|CN815631 HRO4513_G09_M17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4513_G09_M17, mRNA sequence
          Length = 389

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 29/33 (87%)
 Strand = Plus / Plus

                                             
Query: 1031 accggctccgagggcgagatcaggaagcactgc 1063
            ||||| ||| |||| |||||||||||| |||||
Sbjct: 152  accggatccaagggggagatcaggaagaactgc 184



>gb|CN818358.1|CN818358 HRO4469_F03_L05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
            Avena sativa cDNA clone HRO4469_F03_L05, mRNA sequence
          Length = 649

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1262 gttcctttcctcttgtt 1278
            |||||||||||||||||
Sbjct: 270  gttcctttcctcttgtt 254



>gb|CN821245.1|CN821245 HRO4423_B06_D11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4423_B06_D11, mRNA
            sequence
          Length = 522

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 998  tccatggtcaagatggg 1014
            |||||||||||||||||
Sbjct: 79   tccatggtcaagatggg 95



>gb|CN821589.1|CN821589 HRO4408_A07_B14Z Lib AA069E1X Avena sativa cv. Ogle-C etiolated leaf
            Avena sativa cDNA clone HRO4408_A07_B14, mRNA sequence
          Length = 537

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1159 ctgcaggcgttgtcgtc 1175
            |||||||||||||||||
Sbjct: 144  ctgcaggcgttgtcgtc 128



>gb|CN821615.1|CN821615 HRO4408_C09_F18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4408_C09_F18, mRNA
            sequence
          Length = 690

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 999  ccatggtcaagatgggc 1015
            |||||||||||||||||
Sbjct: 395  ccatggtcaagatgggc 411



>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
           complete cds
          Length = 1191

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 281 cacttccacgactgctt 297
           |||||||||||||||||
Sbjct: 190 cacttccacgactgctt 206



>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
           complete cds
          Length = 1197

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 281 cacttccacgactgctt 297
           |||||||||||||||||
Sbjct: 190 cacttccacgactgctt 206



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3406
Number of Sequences: 8143
Number of extensions: 3406
Number of successful extensions: 1030
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 8
length of query: 1469
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1452
effective length of database: 4,564,032
effective search space: 6626974464
effective search space used: 6626974464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)