BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440612.2.2
(665 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819639.1|CN819639 HRO4402_E03_I06ZS5 Lib AA069E1X Aven... 34 0.15
gb|CN820668.1|CN820668 HRO4416_A08_B16ZS5 Lib AA069E1X Aven... 34 0.15
gb|CN820829.1|CN820829 HRO4420_D02_H04ZS5 Lib AA069E1X Aven... 34 0.15
>gb|CN819639.1|CN819639 HRO4402_E03_I06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_E03_I06, mRNA
sequence
Length = 596
Score = 34.2 bits (17), Expect = 0.15
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 487 cgacgaggaggagcaggaggacgag 511
||||||||||||| ||| |||||||
Sbjct: 221 cgacgaggaggaggaggtggacgag 245
>gb|CN820668.1|CN820668 HRO4416_A08_B16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_A08_B16, mRNA
sequence
Length = 381
Score = 34.2 bits (17), Expect = 0.15
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 489 acgaggaggagcaggaggacgagga 513
||||||||||| ||||||| |||||
Sbjct: 153 acgaggaggaggaggaggaggagga 129
>gb|CN820829.1|CN820829 HRO4420_D02_H04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_D02_H04, mRNA
sequence
Length = 551
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 309 atcttcttgcagaagca 325
|||||||||||||||||
Sbjct: 31 atcttcttgcagaagca 15
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1512
Number of Sequences: 8143
Number of extensions: 1512
Number of successful extensions: 393
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 3
length of query: 665
length of database: 4,702,463
effective HSP length: 16
effective length of query: 649
effective length of database: 4,572,175
effective search space: 2967341575
effective search space used: 2967341575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)