BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440568.2.1
(1135 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814884.1|CN814884 HRO4503_E08_J15ZS5 Lib AA071E1X Aven... 630 0.0
gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Aven... 490 e-138
gb|CN819044.1|CN819044 HRO4474_A04_B08ZS5 Lib AA070E1X Aven... 42 0.001
gb|CN814959.1|CN814959 HRO4504_D01_H02ZS5 Lib AA071E1X Aven... 36 0.066
gb|CN818048.1|CN818048 HRO4472_C06_E12ZS5 Lib AA070E1X Aven... 34 0.26
gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Aven... 34 0.26
>gb|CN814884.1|CN814884 HRO4503_E08_J15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E08_J15, mRNA sequence
Length = 830
Score = 630 bits (318), Expect = 0.0
Identities = 558/638 (87%)
Strand = Plus / Minus
Query: 264 ttcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgcttcg 323
||||||||||| || |||||||| || || ||||||||||| ||||| ||||| || |||
Sbjct: 638 ttcagcaggggctggagcgccttcacgacgatgctcatgttaggccgaaagtcagcctcg 579
Query: 324 tattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatagtcc 383
||||| || || || || |||||||| |||||||| || ||||||||||||||| |||||
Sbjct: 578 tattggacgcataaagcagcgacagcagcaaactttgcgacagctttaggaggaaagtcc 519
Query: 384 cctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcc 443
||||||||||||||||||||||| || |||||||| ||||| || |||||||| || |||
Sbjct: 518 cctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttggggtggcc 459
Query: 444 caggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtc 503
|| || ||||| ||||| || ||||| || ||||||||||||||||||||||| ||||||
Sbjct: 458 catgtgacaaggctctgttgccccctcggtaatgtatggtcgacaggtttccttccagtc 399
Query: 504 aacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagttgccca 563
|| ||||| ||||||||||| || ||||| || || || ||||| ||||| ||||| |||
Sbjct: 398 aatagctccagaagaacaactccgaaactgtacacgtcgctcttggagctaagttgtcca 339
Query: 564 gtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagc 623
||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 338 gtcattgcatactcaggtgcatggtatccaaatgttccaagaaccctagttgagtgaagc 279
Query: 624 cgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcg 683
|| ||||||||||||||||||||||| |||| ||| ||||| || || |||||||||||
Sbjct: 278 cgggctgccatgtcaggagcttggtttgacaaatcgaagtcggctattttagctacatca 219
Query: 684 tcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgct 743
||||| |||||||| |||||||| || |||||||| | |||||||||||| ||||| |||
Sbjct: 218 tcatcaaaaagaagaacgttgctggatttgatgtccctgtgtatgatatgaggctgtgct 159
Query: 744 ttctcatgaagatactcgaggcctttcgctgccccaaccgctatcttcacacgttgcgac 803
||||||||||||||||| || ||||||||||| ||||| ||||||||||| || || |
Sbjct: 158 ttctcatgaagatactctagacctttcgctgcaccaacagctatcttcacccgctgtacc 99
Query: 804 cacgataagactggaccgggttgagcccctttaacccctttccttccatgaagcatatca 863
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 98 catgataagactggaccgggttgagcccctttaacacccttccttccatgaagcatatca 39
Query: 864 tgaagggaacccattgtagcgaactcataagcaaggac 901
||||| |||||||| || || |||||||||||||||||
Sbjct: 38 tgaagagaacccatagtggcaaactcataagcaaggac 1
>gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_A04_B07, mRNA sequence
Length = 747
Score = 490 bits (247), Expect = e-138
Identities = 431/491 (87%), Gaps = 1/491 (0%)
Strand = Plus / Minus
Query: 264 ttcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgcttcg 323
||||||||||| || |||||||| || || ||||||||||| ||||| ||||| || |||
Sbjct: 500 ttcagcaggggctggagcgccttcacgacgatgctcatgttaggccgaaagtcagcctcg 441
Query: 324 tattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatagtcc 383
||||| || || || ||||||||||| |||||||| || ||||||||||||||| |||||
Sbjct: 440 tattggacgcataacgcggcgacagcagcaaactttgcgacagctttaggaggaaagtcc 381
Query: 384 cctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcc 443
||||||||||||||||||||||| || |||||||| ||||| || |||||||| || |||
Sbjct: 380 cctccaagtcttgagtcaacacattgcctaaccttatcttcactcagtcttggggtggcc 321
Query: 444 caggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtc 503
|| || ||||| ||||| || ||||| || ||||||||||||||||||||||| ||||||
Sbjct: 320 catgtgacaaggctctgttgccccctcggtaatgtatggtcgacaggtttccttccagtc 261
Query: 504 aacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagttgccca 563
|| ||||| ||||||||||| || ||||| || ||||| ||||| ||||| ||||| |||
Sbjct: 260 aatagctccagaagaacaactccgaaactgtacacatcgctcttggagctaagttgtcca 201
Query: 564 gtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagc 623
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 200 gtcattgcatactcaggtgcatggtatccaaatgttccgagaaccctagttgagtgaagc 141
Query: 624 cgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcg 683
|| ||||||||||||||||||||||| |||| ||| ||||| || || |||||||||||
Sbjct: 140 cgggctgccatgtcaggagcttggtttgacaaatcgaagtcggctattttagctacatca 81
Query: 684 tcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgct 743
||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||| |||
Sbjct: 80 tcatcaaaaagaagaacgttgctggacttgatgtccctgtgtatgatatgaggctg-gct 22
Query: 744 ttctcatgaag 754
|||||||||||
Sbjct: 21 ttctcatgaag 11
>gb|CN819044.1|CN819044 HRO4474_A04_B08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_A04_B08, mRNA sequence
Length = 734
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 519 acaaccccaaaactatatacatcactctt 547
||||| ||||||||||| |||||||||||
Sbjct: 366 acaactccaaaactatagacatcactctt 338
>gb|CN814959.1|CN814959 HRO4504_D01_H02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_D01_H02, mRNA sequence
Length = 522
Score = 36.2 bits (18), Expect = 0.066
Identities = 51/62 (82%)
Strand = Plus / Minus
Query: 435 ggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttc 494
||||| ||||| || || ||||||||||| || || |||| |||||| || || ||||||
Sbjct: 102 ggtgttgcccatgtaactagactctgctgacctctaggcattgtatgatctaccggtttc 43
Query: 495 ct 496
||
Sbjct: 42 ct 41
>gb|CN818048.1|CN818048 HRO4472_C06_E12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_C06_E12, mRNA sequence
Length = 856
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 171 tacctatcatacaagaa 187
|||||||||||||||||
Sbjct: 783 tacctatcatacaagaa 799
>gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_A08_A15, mRNA sequence
Length = 831
Score = 34.2 bits (17), Expect = 0.26
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 518 aacaaccccaaaactatatacatca 542
||||||||||||||| || ||||||
Sbjct: 242 aacaaccccaaaactgtaaacatca 218
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2569
Number of Sequences: 8143
Number of extensions: 2569
Number of successful extensions: 786
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 10
length of query: 1135
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1119
effective length of database: 4,572,175
effective search space: 5116263825
effective search space used: 5116263825
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)