BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Aven... 72 6e-013
>gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_A11_A22, mRNA sequence
Length = 528
Score = 71.9 bits (36), Expect = 6e-013
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 218 gtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgg 277
|||||| | |||||||||||| || |||| |||||| |||||||| ||| |||||||
Sbjct: 49 gtgcgaacagctcaagttcccagcaatggtcgaggtgcacaaccacggtcccctggacgg 108
Query: 278 gaagcactcggtgctggtgttcatgcgctggcccaacgcgacgg 321
|||||||||||||| ||||| | ||||||||||||| |||||
Sbjct: 109 aaagcactcggtgctcatgttccttcgctggcccaacgtgacgg 152
Score = 52.0 bits (26), Expect = 5e-007
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 411 agcccctgcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
||||| ||| |||||||||| |||||| |||||| |||| |||||||||||||
Sbjct: 236 agcccatgcgagcacttcagtagggcgagggaggacggcaagaaggtgatcgat 289
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 954
Number of Sequences: 8143
Number of extensions: 954
Number of successful extensions: 301
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 2
length of query: 542
length of database: 4,702,463
effective HSP length: 16
effective length of query: 526
effective length of database: 4,572,175
effective search space: 2404964050
effective search space used: 2404964050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)