BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440444.2.1
(237 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Aven... 90 1e-018
gb|BE439249.1|BE439249 CDO1400_WHE03D10R ITEC CDO Oat cDNA ... 32 0.20
>gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_A11_A22, mRNA sequence
Length = 528
Score = 89.7 bits (45), Expect = 1e-018
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 27 ttgtcaaccatgaagaaatgagacccaatatcgatcaccttcctgccatccgccctcacc 86
||||||||||||| |||||| || || |||||||||||||| |||| ||| ||||| ||
Sbjct: 318 ttgtcaaccatgaggaaatgtgagcctctatcgatcaccttcttgccgtcctccctcgcc 259
Query: 87 ctggagaaatgcttacacgggctgatgtcaaacctgagcttagccgtctcccctgccttg 146
|| ||| |||| || ||||||| ||||||||| || | ||| |||| || ||| ||
Sbjct: 258 ctactgaagtgctcgcatgggctgacgtcaaacctcaggctggccttctcaccggccatg 199
Query: 147 agatgctggctcctgaacccaatcagctggcttgccgggcgaccttgtttcgtgtttggc 206
||||||||||| | |||||||| ||||||||| |||| || || || ||| |||
Sbjct: 198 agatgctggcttcggaacccaaccagctggctgaccggacgcccacccgtcacgttgggc 139
Query: 207 cagcggaggaacatgagcaccgagtgctt 235
||||| |||||||||||||||||||||||
Sbjct: 138 cagcgaaggaacatgagcaccgagtgctt 110
>gb|BE439249.1|BE439249 CDO1400_WHE03D10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1400_WHE03D10, mRNA sequence
Length = 248
Score = 32.2 bits (16), Expect = 0.20
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 108 ctgatgtcaaacctga 123
||||||||||||||||
Sbjct: 209 ctgatgtcaaacctga 224
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 546
Number of Sequences: 8143
Number of extensions: 546
Number of successful extensions: 143
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 3
length of query: 237
length of database: 4,702,463
effective HSP length: 15
effective length of query: 222
effective length of database: 4,580,318
effective search space: 1016830596
effective search space used: 1016830596
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)