BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818423.1|CN818423 HRO4453_C09_F17ZS5 Lib AA070E1X Aven... 198 4e-051
gb|CN820760.1|CN820760 HRO4414_D11_G22ZS5 Lib AA069E1X Aven... 198 4e-051
gb|CK780253.1|CK780253 umn212 UMN cDNA from oat Avena sativ... 36 0.035
gb|CN817081.1|CN817081 HRO4528_A07_B14ZS5 Lib AA071E1X Aven... 36 0.035
gb|CN817536.1|CN817536 HRO4463_H05_O09ZS5 Lib AA070E1X Aven... 36 0.035
>gb|CN818423.1|CN818423 HRO4453_C09_F17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C09_F17, mRNA sequence
Length = 619
Score = 198 bits (100), Expect = 4e-051
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
|||| ||||||| || ||||| || ||||||||||||||||||||||| || ||||||||
Sbjct: 284 ttaagttgtctccgttttctccagtgtgttgtagttgagcaacttctcgataaggtcaac 225
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||
Sbjct: 224 atgggtcatgagcatacgacggcagcagtagcgaaccaagcccaaggcatccagagcatc 165
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||| ||||||||||| || || ||||| | ||||||||||| || || ||
Sbjct: 164 cccttccgtgtaatcggcctggagaagatcaaggtagtggtcccacttgttaccgatcac 105
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttc 496
|||||||||||||||||||||||| ||||| |||||||||
Sbjct: 104 cttgccgcaggtgaagcagcgcacggggatgatcatcttc 65
>gb|CN820760.1|CN820760 HRO4414_D11_G22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_D11_G22, mRNA
sequence
Length = 498
Score = 198 bits (100), Expect = 4e-051
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
|||| ||||||| || ||||| || ||||||||||||||||||||||| || ||||||||
Sbjct: 262 ttaagttgtctccgttttctccagtgtgttgtagttgagcaacttctcgataaggtcaac 203
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||||||||| || | |||||||||||| | ||| |||| ||||||||||||||
Sbjct: 202 atgggtcatgagcatacgacggcagcagtagcgaaccaagcccaaggcatccagagcatc 143
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||| ||||||||||| || || ||||| | ||||||||||| || || ||
Sbjct: 142 cccttccgtgtaatcggcctggagaagatcaaggtagtggtcccacttgttaccgatcac 83
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttc 496
|||||||||||||||||||||||| ||||| |||||||||
Sbjct: 82 cttgccgcaggtgaagcagcgcacggggatgatcatcttc 43
>gb|CK780253.1|CK780253 umn212 UMN cDNA from oat Avena sativa cDNA clone JMT4_E10 5', mRNA
sequence
Length = 620
Score = 36.2 bits (18), Expect = 0.035
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 444 tgttcccaataaccttgc 461
||||||||||||||||||
Sbjct: 110 tgttcccaataaccttgc 127
>gb|CN817081.1|CN817081 HRO4528_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_A07_B14, mRNA sequence
Length = 745
Score = 36.2 bits (18), Expect = 0.035
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 444 tgttcccaataaccttgc 461
||||||||||||||||||
Sbjct: 164 tgttcccaataaccttgc 181
>gb|CN817536.1|CN817536 HRO4463_H05_O09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_H05_O09, mRNA sequence
Length = 826
Score = 36.2 bits (18), Expect = 0.035
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 74 tacattagctttctttta 91
||||||||||||||||||
Sbjct: 355 tacattagctttctttta 372
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1659
Number of Sequences: 8143
Number of extensions: 1659
Number of successful extensions: 351
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 7
length of query: 605
length of database: 4,702,463
effective HSP length: 16
effective length of query: 589
effective length of database: 4,572,175
effective search space: 2693011075
effective search space used: 2693011075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)