BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437779.2.1
(3727 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 198 3e-050
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 167 9e-041
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 125 3e-028
gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA ... 88 7e-017
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 86 3e-016
gb|CN819706.1|CN819706 HRO4403_B11_D21ZS5 Lib AA069E1X Aven... 64 1e-009
gb|CN815744.1|CN815744 HRO4510_A08_A16ZS5 Lib AA071E1X Aven... 52 4e-006
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 42 0.004
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 198 bits (100), Expect = 3e-050
Identities = 229/272 (84%)
Strand = Plus / Minus
Query: 284 acccgggtggtgaatggatcgatacgaacccacatcagggaaaagatcgacgcaaggagg 343
|||||||| ||||||||||| ||||||||||||| || ||| |||||||| || ||||||
Sbjct: 287 acccgggtagtgaatggatcaatacgaacccacagcaaggagaagatcgaagcgaggagg 228
Query: 344 atagcccagacaacgacaatggtcggcgtgcggttctgcttccccatgaggcccttgagg 403
||||||||||| | |||||| ||||| |||||||| | | ||||| || |||||||||
Sbjct: 227 atagcccagacgatgacaatcgtcggtgtgcggtttgtcctgcccataagacccttgagg 168
Query: 404 aaggggtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaaagaggtccc 463
|| ||||| | ||| |||||||||||||| |||||||||||||| ||||| || || |||
Sbjct: 167 aatgggtataagtgaacaatcacccagaaggcaaagaagagctttccgaacagcggcccc 108
Query: 464 catgactggtaaccgctattgattgcgtaggaaatgccagcgaccacgccgaccaggttg 523
||||| |||||||| || ||||| || ||||| ||||||| || || ||||||| |||
Sbjct: 107 catgattggtaaccactgttgatggcataggaggtgccagcaacaacaccgaccatgtta 48
Query: 524 atgatcaaaatagtggttggtgggatcagaag 555
||||||||||| || ||||| ||||| |||||
Sbjct: 47 atgatcaaaattgttgttggagggatgagaag 16
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 167 bits (84), Expect = 9e-041
Identities = 171/200 (85%)
Strand = Plus / Minus
Query: 278 ccagtgacccgggtggtgaatggatcgatacgaacccacatcagggaaaagatcgacgca 337
|||| ||||||||| ||||||||||||||||||||||||| || ||| |||||||| ||
Sbjct: 204 ccagcgacccgggtagtgaatggatcgatacgaacccacagcaaggagaagatcgaagcg 145
Query: 338 aggaggatagcccagacaacgacaatggtcggcgtgcggttctgcttccccatgaggccc 397
||||||||||||||||| | ||| || ||||| |||||||| | | ||||| || |||
Sbjct: 144 aggaggatagcccagacgatgacgatcgtcggtgtgcggtttgtcctgcccataagaccc 85
Query: 398 ttgaggaaggggtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaaaga 457
|||||||| ||||| | ||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct: 84 ttgaggaacgggtataagtgaacaatcacccagaaggcaaagaagagctttccgaagagc 25
Query: 458 ggtccccatgactggtaacc 477
|| |||||||| ||||||||
Sbjct: 24 ggcccccatgattggtaacc 5
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 125 bits (63), Expect = 3e-028
Identities = 174/211 (82%)
Strand = Plus / Minus
Query: 356 acgacaatggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggggtacagg 415
||||| ||||| ||||||||||| ||| |||||||||| ||||||||||| ||||| |||
Sbjct: 222 acgacgatggtgggcgtgcggttttgcctccccatgagccccttgaggaatgggtagagg 163
Query: 416 tggacaatcacccagaacgcaaagaagagcttcccgaaaagaggtccccatgactggtaa 475
||||| || |||||||| | |||||||||||||||||| || || ||||||||| |||
Sbjct: 162 tggacgatgacccagaaggaaaagaagagcttcccgaagagggggccccatgacccgtag 103
Query: 476 ccgctattgattgcgtaggaaatgccagcgaccacgccgaccaggttgatgatcaaaata 535
|| | |||| ||||| ||||| ||||| || | |||||||| ||||||||| | |
Sbjct: 102 ccattgttgactgcgtcggaaacaccagcaacaatgccgaccatgttgatgatgatgagt 43
Query: 536 gtggttggtgggatcagaagcgttgtccact 566
|| |||||||||||||| || || |||||||
Sbjct: 42 gtagttggtgggatcagtagggtggtccact 12
>gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1430_WHE05G09, mRNA sequence
Length = 177
Score = 87.7 bits (44), Expect = 7e-017
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1547 tcataaccatataaggccgttctgttaaacacacaa-ccagttcccacataaactggccc 1605
||||||||||| | || |||||||| || |||||| |||||||||||||||||||||||
Sbjct: 82 tcataaccatagatagctgttctgttgaaaacacaatccagttcccacataaactggccc 23
Query: 1606 ttgaatgccatcaagacctc 1625
||||||||||||||| ||||
Sbjct: 22 ttgaatgccatcaaggcctc 3
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 85.7 bits (43), Expect = 3e-016
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 284 acccgggtggtgaatggatcgatacgaacccacatcagggaaaagatcgacgcaaggagg 343
|||||||| ||||||||||| ||||||||||||| || ||| |||||||| || ||||||
Sbjct: 87 acccgggtagtgaatggatcaatacgaacccacagcaaggagaagatcgaagcgaggagg 28
Query: 344 atagcccagac 354
|||||||||||
Sbjct: 27 atagcccagac 17
>gb|CN819706.1|CN819706 HRO4403_B11_D21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B11_D21, mRNA
sequence
Length = 452
Score = 63.9 bits (32), Expect = 1e-009
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 278 ccagtgacccgggtggtgaatggatcgatacgaacccaca 317
|||| ||||||||| |||||||||||||||||||||||||
Sbjct: 55 ccagcgacccgggtagtgaatggatcgatacgaacccaca 16
>gb|CN815744.1|CN815744 HRO4510_A08_A16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_A08_A16, mRNA sequence
Length = 445
Score = 52.0 bits (26), Expect = 4e-006
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 284 acccgggtggtgaatggatcgatacgaacccaca 317
|||||||| ||||||||||| |||||||||||||
Sbjct: 35 acccgggtagtgaatggatcaatacgaacccaca 2
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 42.1 bits (21), Expect = 0.004
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 395 cccttgaggaaggggtacaggtggacaatcacc 427
||||||||||| ||||| || ||||||||||||
Sbjct: 43 cccttgaggaatgggtagagatggacaatcacc 11
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9015
Number of Sequences: 8143
Number of extensions: 9015
Number of successful extensions: 2522
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2505
Number of HSP's gapped (non-prelim): 13
length of query: 3727
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3710
effective length of database: 4,564,032
effective search space: 16932558720
effective search space used: 16932558720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)