BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.2
(2231 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA ... 127 5e-029
gb|CN815716.1|CN815716 HRO4514_G03_M06ZS5 Lib AA071E1X Aven... 36 0.13
gb|CN816136.1|CN816136 HRO4517_D06_G11ZS5 Lib AA071E1X Aven... 36 0.13
>gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO465_WHE2G0092, mRNA sequence
Length = 284
Score = 127 bits (64), Expect = 5e-029
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 1858 tcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcggtggaccagc 1917
|||| ||||| |||||| | ||||||||| || |||| ||||| | ||||||||||||||
Sbjct: 284 tcggcgactatgggttctccgggaagctggcgaggacatggttaaagtcggtggaccagc 225
Query: 1918 tgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggttcgggctca 1977
||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 224 tgccgatgaacgtgggcgacaagcactacgacccgctgttcccgttcgggttcgggctca 165
Query: 1978 ccac 1981
||||
Sbjct: 164 ccac 161
>gb|CN815716.1|CN815716 HRO4514_G03_M06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G03_M06, mRNA sequence
Length = 550
Score = 36.2 bits (18), Expect = 0.13
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 182 cgagggcgtgccgccgccgtac 203
||||||||||||||| ||||||
Sbjct: 123 cgagggcgtgccgccaccgtac 144
>gb|CN816136.1|CN816136 HRO4517_D06_G11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_D06_G11, mRNA sequence
Length = 582
Score = 36.2 bits (18), Expect = 0.13
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 182 cgagggcgtgccgccgccgtac 203
||||||||||||||| ||||||
Sbjct: 124 cgagggcgtgccgccaccgtac 145
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4538
Number of Sequences: 8143
Number of extensions: 4538
Number of successful extensions: 1389
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 5
length of query: 2231
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2214
effective length of database: 4,564,032
effective search space: 10104766848
effective search space used: 10104766848
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)