BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.1
(1264 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Aven... 232 6e-061
gb|BE439352.1|BE439352 CDO1365_WHE05G05R ITEC CDO Oat cDNA ... 38 0.019
gb|CN815842.1|CN815842 HRO4511_A11_B21ZS5 Lib AA071E1X Aven... 38 0.019
gb|CN815994.1|CN815994 HRO4515_G01_N01ZS5 Lib AA071E1X Aven... 38 0.019
gb|CN817076.1|CN817076 HRO4528_A01_B02ZS5 Lib AA071E1X Aven... 38 0.019
gb|CN817335.1|CN817335 HRO4465_B06_D11ZS5 Lib AA070E1X Aven... 38 0.019
gb|CN817982.1|CN817982 HRO4456_D01_G02ZS5 Lib AA070E1X Aven... 38 0.019
gb|CN818016.1|CN818016 HRO4472_F06_K12ZS5 Lib AA070E1X Aven... 38 0.019
gb|CN819548.1|CN819548 HRO4401_D11_G21ZS5 Lib AA069E1X Aven... 38 0.019
gb|CN815877.1|CN815877 HRO4511_E02_J03ZS5 Lib AA071E1X Aven... 36 0.074
gb|CN817301.1|CN817301 HRO4464_H06_O12ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN817381.1|CN817381 HRO4465_E03_J05ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN817539.1|CN817539 HRO4463_H08_O15ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN817591.1|CN817591 HRO4458_G03_N06ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN818141.1|CN818141 HRO4471_D10_G19ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN818656.1|CN818656 HRO4467_E12_I23ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN820004.1|CN820004 HRO4409_H01_O01ZS5 Lib AA069E1X Aven... 34 0.29
gb|CN821020.1|CN821020 HRO4422_F05_K10ZS5 Lib AA069E1X Aven... 34 0.29
gb|CN821183.1|CN821183 HRO4428_D10_H20ZS5 Lib AA069E1X Aven... 34 0.29
>gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_H10_O20, mRNA
sequence
Length = 657
Score = 232 bits (117), Expect = 6e-061
Identities = 223/257 (86%), Gaps = 1/257 (0%)
Strand = Plus / Minus
Query: 567 attctatttagacgaatgttctggcttttccgtggcatgggctccagtgatgcaatcacc 626
||||||||||| || ||| ||||||| ||| ||| ||||| || || || |||||||||
Sbjct: 260 attctatttagccggatgctctggctcttctttgggatgggttcgagcgacgcaatcacc 201
Query: 627 tgaggcatggtcattcctcctgacacaattatttcaattccttctcgaatggataaatta 686
|| ||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct: 200 tgtggcatggtcattcctccagacacgataatttcaattccttctcgaatggataagttt 141
Query: 687 ggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtatagatgatttgtt 746
||||| |||||||| ||| ||||| ||||||||| ||||| || ||||| |||||||||
Sbjct: 140 ggtctgatgatctcatcactgttcagcagaaatatatcaccaatatataggtgatttgtt 81
Query: 747 ggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggaccacagttgat 806
|||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||| |||||
Sbjct: 80 ggcacataaacactacagagttcttcgtcgcctttgtctgtctgaaggacaacatttgat 21
Query: 807 gttatgaatccaaatgc 823
| ||| |||||||||||
Sbjct: 20 g-tataaatccaaatgc 5
>gb|BE439352.1|BE439352 CDO1365_WHE05G05R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1365_WHE05G05, mRNA sequence
Length = 331
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 329 taccgggccccccctcgag 311
>gb|CN815842.1|CN815842 HRO4511_A11_B21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_A11_B21, mRNA sequence
Length = 720
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 720 taccgggccccccctcgag 702
>gb|CN815994.1|CN815994 HRO4515_G01_N01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_G01_N01, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 589 taccgggccccccctcgag 571
>gb|CN817076.1|CN817076 HRO4528_A01_B02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_A01_B02, mRNA sequence
Length = 613
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 612 taccgggccccccctcgag 594
>gb|CN817335.1|CN817335 HRO4465_B06_D11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_B06_D11, mRNA sequence
Length = 551
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 548 taccgggccccccctcgag 530
>gb|CN817982.1|CN817982 HRO4456_D01_G02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_D01_G02, mRNA sequence
Length = 723
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 723 taccgggccccccctcgag 705
>gb|CN818016.1|CN818016 HRO4472_F06_K12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_F06_K12, mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 618 taccgggccccccctcgag 600
>gb|CN819548.1|CN819548 HRO4401_D11_G21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_D11_G21, mRNA
sequence
Length = 819
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 taccgggccccccctcgag 19
|||||||||||||||||||
Sbjct: 816 taccgggccccccctcgag 798
>gb|CN815877.1|CN815877 HRO4511_E02_J03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E02_J03, mRNA sequence
Length = 637
Score = 36.2 bits (18), Expect = 0.074
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 accgggccccccctcgag 19
||||||||||||||||||
Sbjct: 637 accgggccccccctcgag 620
>gb|CN817301.1|CN817301 HRO4464_H06_O12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H06_O12, mRNA sequence
Length = 804
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 225 aagcccatgatcccctt 241
|||||||||||||||||
Sbjct: 396 aagcccatgatcccctt 380
>gb|CN817381.1|CN817381 HRO4465_E03_J05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_E03_J05, mRNA sequence
Length = 447
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ccgggccccccctcgag 19
|||||||||||||||||
Sbjct: 447 ccgggccccccctcgag 431
>gb|CN817539.1|CN817539 HRO4463_H08_O15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_H08_O15, mRNA sequence
Length = 758
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ccgggccccccctcgag 19
|||||||||||||||||
Sbjct: 758 ccgggccccccctcgag 742
>gb|CN817591.1|CN817591 HRO4458_G03_N06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_G03_N06, mRNA sequence
Length = 577
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ccgggccccccctcgag 19
|||||||||||||||||
Sbjct: 577 ccgggccccccctcgag 561
>gb|CN818141.1|CN818141 HRO4471_D10_G19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_D10_G19, mRNA sequence
Length = 791
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ccgggccccccctcgag 19
|||||||||||||||||
Sbjct: 791 ccgggccccccctcgag 775
>gb|CN818656.1|CN818656 HRO4467_E12_I23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_E12_I23, mRNA sequence
Length = 862
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ccgggccccccctcgag 19
|||||||||||||||||
Sbjct: 862 ccgggccccccctcgag 846
>gb|CN820004.1|CN820004 HRO4409_H01_O01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_H01_O01, mRNA
sequence
Length = 453
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ccgggccccccctcgag 19
|||||||||||||||||
Sbjct: 453 ccgggccccccctcgag 437
>gb|CN821020.1|CN821020 HRO4422_F05_K10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_F05_K10, mRNA
sequence
Length = 676
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3 ccgggccccccctcgag 19
|||||||||||||||||
Sbjct: 669 ccgggccccccctcgag 653
>gb|CN821183.1|CN821183 HRO4428_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_D10_H20, mRNA
sequence
Length = 448
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 332 atctcctgtaaaaatgg 348
|||||||||||||||||
Sbjct: 369 atctcctgtaaaaatgg 385
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4101
Number of Sequences: 8143
Number of extensions: 4101
Number of successful extensions: 1443
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 25
length of query: 1264
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1248
effective length of database: 4,572,175
effective search space: 5706074400
effective search space used: 5706074400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)