BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430946.2.2
(3838 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 101 5e-021
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 100 2e-020
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 72 4e-012
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 70 2e-011
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 44 0.001
gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA ... 42 0.004
gb|CN815313.1|CN815313 HRO4508_C10_F20ZS5 Lib AA071E1X Aven... 36 0.22
gb|CN815411.1|CN815411 HRO4509_D03_G05ZS5 Lib AA071E1X Aven... 36 0.22
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 101 bits (51), Expect = 5e-021
Identities = 141/171 (82%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||||||||||||||| || || || ||||| | |||||| |||||||| || |||
Sbjct: 171 acccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacgatcgtcggt 112
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|||||||| ||| ||||| |||||||||||||| ||||| | || | |||||||||
Sbjct: 111 gtgcggtttgtcctgcccataagacccttgaggaacgggtataagtgaacaatcacccag 52
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactg 669
| | ||||| |||||||| |||||||| ||||| |||||||| ||||||
Sbjct: 51 aaggcaaagaagagctttccgaagagcggcccccatgattggtaaccactg 1
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 99.6 bits (50), Expect = 2e-020
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
|||||||||||||||||||| || || || ||||| | |||||| ||||| || || |||
Sbjct: 260 acccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacaatcgtcggt 201
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccag 618
|||||||| ||| ||||| |||||||||||||| ||||| | || | |||||||||
Sbjct: 200 gtgcggtttgtcctgcccataagacccttgaggaatgggtataagtgaacaatcacccag 141
Query: 619 atcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatggca 678
| | ||||| |||||||| || ||||| ||||| |||||||| |||||||| ||||||
Sbjct: 140 aaggcaaagaagagctttccgaacagcggcccccatgattggtaaccactgttgatggca 81
Query: 679 ta 680
||
Sbjct: 80 ta 79
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 71.9 bits (36), Expect = 4e-012
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 546 gacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatg 605
|||||| || || |||||||| ||||| |||||||| ||||||||||| |||||||| ||
Sbjct: 220 gacgatggtgggcgtgcggttttgcctccccatgagccccttgaggaatgggtagaggtg 161
Query: 606 gaggatcacccagatcgagaagaacagctttccaaagagcggacccca 653
|| ||| ||||||| || ||||| ||||| || ||||| || |||||
Sbjct: 160 gacgatgacccagaaggaaaagaagagcttcccgaagagggggcccca 113
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 69.9 bits (35), Expect = 2e-011
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 529 aggatggaccagacaatgacgattgttggtgtgcggttctgccttcccatgagacccttg 588
||||| |||||||| |||||||| || || || | |||||||||||| | |||||||||
Sbjct: 97 aggattgaccagacgatgacgatcgtcggggtcctgttctgccttccaagcagacccttg 38
Query: 589 aggaaggggtagagatgga 607
||||| |||||||||||||
Sbjct: 37 aggaatgggtagagatgga 19
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 44.1 bits (22), Expect = 0.001
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgac 548
|||||||||||||||||||| || || || ||||| | |||||| |||||
Sbjct: 60 acccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgac 11
>gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1430_WHE05G09, mRNA sequence
Length = 177
Score = 42.1 bits (21), Expect = 0.004
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1769 atcctgttcccacgtaaactggaccctgaatgccatc 1805
|||| |||||||| |||||||| || |||||||||||
Sbjct: 47 atccagttcccacataaactggcccttgaatgccatc 11
>gb|CN815313.1|CN815313 HRO4508_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_C10_F20, mRNA sequence
Length = 611
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 194 aaaacttcaaaattcaca 211
||||||||||||||||||
Sbjct: 408 aaaacttcaaaattcaca 425
>gb|CN815411.1|CN815411 HRO4509_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D03_G05, mRNA sequence
Length = 645
Score = 36.2 bits (18), Expect = 0.22
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 2797 tactggaagaagaagcacaggatgat 2822
|||||||||||| |||||||| ||||
Sbjct: 48 tactggaagaaggagcacaggctgat 73
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,353
Number of Sequences: 8143
Number of extensions: 10353
Number of successful extensions: 2812
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2802
Number of HSP's gapped (non-prelim): 10
length of query: 3838
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3821
effective length of database: 4,564,032
effective search space: 17439166272
effective search space used: 17439166272
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)