BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419471.2.6
(1648 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA ... 220 3e-057
gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Aven... 167 4e-041
gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Aven... 139 9e-033
gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Aven... 90 7e-018
gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Aven... 82 2e-015
gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Aven... 78 3e-014
gb|CN815154.1|CN815154 HRO4506_E02_I04ZS5 Lib AA071E1X Aven... 38 0.024
gb|CN819445.1|CN819445 HRO4406_H02_O04ZS5 Lib AA069E1X Aven... 38 0.024
gb|CN819446.1|CN819446 HRO4406_H12_O04ZS5 Lib AA069E1X Aven... 38 0.024
gb|CN816069.1|CN816069 HRO4516_E11_J22ZS5 Lib AA071E1X Aven... 34 0.38
gb|CN816761.1|CN816761 HRO4524_E02_J04ZS5 Lib AA071E1X Aven... 34 0.38
gb|CN817001.1|CN817001 HRO4527_B08_D15ZS5 Lib AA071E1X Aven... 34 0.38
gb|CN817157.1|CN817157 HRO4528_H03_P06ZS5 Lib AA071E1X Aven... 34 0.38
gb|CN817271.1|CN817271 HRO4454_C10_F20ZS5 Lib AA070E1X Aven... 34 0.38
gb|CN817424.1|CN817424 HRO4465_G08_N15ZS5 Lib AA070E1X Aven... 34 0.38
gb|CN818043.1|CN818043 HRO4472_D07_G14ZS5 Lib AA070E1X Aven... 34 0.38
gb|CN818813.1|CN818813 HRO4473_G02_XXXZS5 Lib AA070E1X Aven... 34 0.38
gb|CN819670.1|CN819670 HRO4402_G10_M20ZS5 Lib AA069E1X Aven... 34 0.38
gb|CN819996.1|CN819996 HRO4409_F11_K21ZS5 Lib AA069E1X Aven... 34 0.38
gb|CN821537.1|CN821537 HRO4426_D10_G20ZS5 Lib AA069E1X Aven... 34 0.38
gb|CN821625.1|CN821625 HRO4408_D07_H14ZS5 Lib AA069E1X Aven... 34 0.38
>gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1421_WHE03E02, mRNA sequence
Length = 275
Score = 220 bits (111), Expect = 3e-057
Identities = 204/235 (86%)
Strand = Plus / Plus
Query: 1131 ctctccgtgttcgtcgacacgtacggcaccggcgcgatccccgacaaggagatcctcaag 1190
||||| ||||| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 12 ctctcggtgtttgtggacacatacggcacaggcaggatccctgacaaggatatcctcaac 71
Query: 1191 attgtcaaggagaacttcgatttcaggcctggcatgatcatcatcaaccttgacctcaag 1250
||||||||||||||||| || |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 72 attgtcaaggagaactttgacttcaggcccggcatgatcatcatcaacctcgacctgaag 131
Query: 1251 aaaggcggcaacgggcgctacctcaagacggcggcctacggccactttggaagggacgac 1310
| || || || ||||| ||||||||||||||||| || || |||||||||||||| |
Sbjct: 132 aggggtgggaatgggcggtacctcaagacggcggcgtatgggcactttggaagggatggg 191
Query: 1311 cctgacttcacctgggaggtggtgaagccactcaagtcggagaaaccttctgcct 1365
|| |||||||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct: 192 ccagacttcacctgggaggtggtgaagcccctcaagtgggagaacccttctgcct 246
>gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_B12_D24, mRNA sequence
Length = 718
Score = 167 bits (84), Expect = 4e-041
Identities = 173/202 (85%), Gaps = 3/202 (1%)
Strand = Plus / Plus
Query: 1146 gacacgtacggcaccggcgcgatccccgacaaggagatcctcaagattgtcaaggagaac 1205
||||| |||||||||||| ||||||||||| ||||||||| ||| | || |||||||||
Sbjct: 12 gacacctacggcaccggcaagatccccgacagggagatcctgaagctcgtgaaggagaac 71
Query: 1206 ttcgatttcaggcctggcatgatcatcatcaaccttgacctcaagaaaggcggcaacggg 1265
||||| |||||||| || ||||||| ||||||||||||||||||||| ||||| ||| ||
Sbjct: 72 ttcgacttcaggcccgggatgatcagcatcaaccttgacctcaagaagggcgggaacagg 131
Query: 1266 cgctacctcaagacggcggcctacggccactttggaagggacgaccctgacttcacctgg 1325
| | ||||||| || |||||||||||||| || | || ||||| ||||||||||||
Sbjct: 132 ---ttcatcaagaccgccgcctacggccacttcggccgtgaggaccccgacttcacctgg 188
Query: 1326 gaggtggtgaagccactcaagt 1347
|||||||||||||| |||||||
Sbjct: 189 gaggtggtgaagcccctcaagt 210
>gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_H09_P17, mRNA sequence
Length = 608
Score = 139 bits (70), Expect = 9e-033
Identities = 270/336 (80%), Gaps = 3/336 (0%)
Strand = Plus / Plus
Query: 1012 ccaaggttgaccgcagcggagcctatgtcgcaaggcaggctgccaagagcatcgtcgcca 1071
|||||||||||||||| || ||||| | || |||||||||||||||||||| || ||||
Sbjct: 15 ccaaggttgaccgcagtggtgcctacattgccaggcaggctgccaagagcattgttgcca 74
Query: 1072 gcggccttgctcgccgcgccatcgtccaggtgtcttacgccatcggcgtgcccgagcctc 1131
|||| ||||| ||||| | |||||| ||| | || || ||||| || ||||| |||||
Sbjct: 75 gcgggcttgcacgccgtgtcatcgtgcagatctcgtatgccattggtgtgcctgagccct 134
Query: 1132 tctccgtgttcgtcgacacgtacggcaccggcgcgatccccgacaaggagatcctcaaga 1191
| || ||||| || ||| | || ||||| ||| ||| || |||| ||||||||| |||
Sbjct: 135 tgtctgtgtttgtagactcctatggcacgggcaagattcctgacagggagatcctgaagc 194
Query: 1192 ttgtcaaggagaacttcgatttcaggcctggcatgatcatcatcaaccttgacctcaaga 1251
| || ||||||||||| || || |||||||| ||||||| ||||||||||||| | ||||
Sbjct: 195 tggtaaaggagaactttgactttaggcctgggatgatcagcatcaaccttgacttgaaga 254
Query: 1252 aaggcggcaacgggcgctacctcaagacggcggcctacggccactttggaagggacgacc 1311
| || ||||| || | | ||||||| || |||||||| |||||||| | || ||
Sbjct: 255 agggtggcaatagg---ttcatcaagaccgctgcctacggtcactttgggcgtgatgatg 311
Query: 1312 ctgacttcacctgggaggtggtgaagccactcaagt 1347
||||||||||||||||||| |||||||| |||||||
Sbjct: 312 ctgacttcacctgggaggttgtgaagcctctcaagt 347
>gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B02_C03, mRNA sequence
Length = 656
Score = 89.7 bits (45), Expect = 7e-018
Identities = 143/175 (81%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 1173 gacaaggagatcctcaagattgtcaaggagaacttcgatttcaggcctggcatgatcatc 1232
|||| ||||||||| ||| | || ||||||||||| || || |||||||| ||||||| |
Sbjct: 46 gacagggagatcctgaagctggtaaaggagaactttgactttaggcctgggatgatcagc 105
Query: 1233 atcaaccttgacctcaagaaaggcggcaacgggcgctacctcaagacggcggcctacggc 1292
|||||||||||| | ||||| || ||||| || | | ||||||| || ||||||||
Sbjct: 106 atcaaccttgacttgaagaagggtggcaatagg---ttcatcaagaccgctgcctacggt 162
Query: 1293 cactttggaagggacgaccctgacttcacctgggaggtggtgaagccactcaagt 1347
|||||||| | || || ||||||||||||||||||| |||||||| |||||||
Sbjct: 163 cactttgggcgtgatgatgctgacttcacctgggaggttgtgaagcctctcaagt 217
>gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D02_G04, mRNA
sequence
Length = 515
Score = 81.8 bits (41), Expect = 2e-015
Identities = 124/151 (82%), Gaps = 3/151 (1%)
Strand = Plus / Plus
Query: 1197 aaggagaacttcgatttcaggcctggcatgatcatcatcaaccttgacctcaagaaaggc 1256
||||||||||| || || |||||||| ||||||| ||||||||||||| | ||||| ||
Sbjct: 13 aaggagaactttgactttaggcctgggatgatcagcatcaaccttgacttgaagaagggt 72
Query: 1257 ggcaacgggcgctacctcaagacggcggcctacggccactttggaagggacgaccctgac 1316
||||| || | | ||||||| || |||||||| |||||||| | || || |||||
Sbjct: 73 ggcaatagg---ttcatcaagaccgctgcctacggtcactttgggcgtgatgatgctgac 129
Query: 1317 ttcacctgggaggtggtgaagccactcaagt 1347
|||||||||||||| |||||||| |||||||
Sbjct: 130 ttcacctgggaggttgtgaagcctctcaagt 160
>gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_H04_O07, mRNA sequence
Length = 317
Score = 77.8 bits (39), Expect = 3e-014
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 1273 tcaagacggcggcctacggccactttggaagggacgaccctgacttcacctgggaggtgg 1332
||||||| || ||||||||||||||||| | || ||||| |||||||| ||||||||||
Sbjct: 26 tcaagaccgccgcctacggccactttggccgtgaggaccccgacttcacatgggaggtgg 85
Query: 1333 tgaagccactcaagt 1347
||||||| |||||||
Sbjct: 86 tgaagcccctcaagt 100
>gb|CN815154.1|CN815154 HRO4506_E02_I04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_E02_I04, mRNA sequence
Length = 439
Score = 38.2 bits (19), Expect = 0.024
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1472 tatcgtttgtgttgtactg 1490
|||||||||||||||||||
Sbjct: 413 tatcgtttgtgttgtactg 431
>gb|CN819445.1|CN819445 HRO4406_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_H02_O04, mRNA
sequence
Length = 403
Score = 38.2 bits (19), Expect = 0.024
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 attcggcacgaggctgaga 38
|||||||||||||||||||
Sbjct: 2 attcggcacgaggctgaga 20
>gb|CN819446.1|CN819446 HRO4406_H12_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_H12_O04, mRNA
sequence
Length = 403
Score = 38.2 bits (19), Expect = 0.024
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 attcggcacgaggctgaga 38
|||||||||||||||||||
Sbjct: 2 attcggcacgaggctgaga 20
>gb|CN816069.1|CN816069 HRO4516_E11_J22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4516_E11_J22, mRNA sequence
Length = 585
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 attcggcacgaggctga 36
|||||||||||||||||
Sbjct: 4 attcggcacgaggctga 20
>gb|CN816761.1|CN816761 HRO4524_E02_J04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4524_E02_J04, mRNA sequence
Length = 530
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21 ttcggcacgaggctgag 37
|||||||||||||||||
Sbjct: 1 ttcggcacgaggctgag 17
>gb|CN817001.1|CN817001 HRO4527_B08_D15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4527_B08_D15, mRNA sequence
Length = 458
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21 ttcggcacgaggctgag 37
|||||||||||||||||
Sbjct: 1 ttcggcacgaggctgag 17
>gb|CN817157.1|CN817157 HRO4528_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4528_H03_P06, mRNA sequence
Length = 713
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18 gaattcggcacgaggct 34
|||||||||||||||||
Sbjct: 1 gaattcggcacgaggct 17
>gb|CN817271.1|CN817271 HRO4454_C10_F20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4454_C10_F20, mRNA
sequence
Length = 490
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 cggcacgaggctgagac 39
|||||||||||||||||
Sbjct: 1 cggcacgaggctgagac 17
>gb|CN817424.1|CN817424 HRO4465_G08_N15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4465_G08_N15, mRNA
sequence
Length = 228
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 attcggcacgaggctga 36
|||||||||||||||||
Sbjct: 12 attcggcacgaggctga 28
>gb|CN818043.1|CN818043 HRO4472_D07_G14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4472_D07_G14, mRNA
sequence
Length = 723
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 attcggcacgaggctga 36
|||||||||||||||||
Sbjct: 2 attcggcacgaggctga 18
>gb|CN818813.1|CN818813 HRO4473_G02_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4473_G02_XXX, mRNA
sequence
Length = 615
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21 ttcggcacgaggctgag 37
|||||||||||||||||
Sbjct: 1 ttcggcacgaggctgag 17
>gb|CN819670.1|CN819670 HRO4402_G10_M20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G10_M20, mRNA
sequence
Length = 585
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 attcggcacgaggctga 36
|||||||||||||||||
Sbjct: 1 attcggcacgaggctga 17
>gb|CN819996.1|CN819996 HRO4409_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_F11_K21, mRNA
sequence
Length = 403
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 aattcggcacgaggctg 35
|||||||||||||||||
Sbjct: 1 aattcggcacgaggctg 17
>gb|CN821537.1|CN821537 HRO4426_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D10_G20, mRNA
sequence
Length = 769
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 18 gaattcggcacgaggct 34
|||||||||||||||||
Sbjct: 649 gaattcggcacgaggct 633
>gb|CN821625.1|CN821625 HRO4408_D07_H14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D07_H14, mRNA
sequence
Length = 522
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 attcggcacgaggctga 36
|||||||||||||||||
Sbjct: 1 attcggcacgaggctga 17
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6510
Number of Sequences: 8143
Number of extensions: 6510
Number of successful extensions: 2399
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2369
Number of HSP's gapped (non-prelim): 29
length of query: 1648
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1631
effective length of database: 4,564,032
effective search space: 7443936192
effective search space used: 7443936192
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)