BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.4
(582 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 161 8e-040
gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Aven... 62 6e-010
gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Aven... 38 0.008
gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Aven... 38 0.008
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 161 bits (81), Expect = 8e-040
Identities = 210/253 (83%)
Strand = Plus / Minus
Query: 308 actggatgatggaacggtagtaggtgttgggaacccagttggccgggatgacctggttgg 367
|||||| || ||| ||||||| ||||||||| ||||||||| ||||||| | |||||
Sbjct: 253 actggacgaaggagcggtagtcggtgttgggcctccagttggctgggatgatgttgttgg 194
Query: 368 ccaccagcgtcttgccggactcgttggtgatgcgcagggagaagggcgcggcgaggcggt 427
| || ||| ||||||||| ||| |||||||||||| |||||| ||||| ||||||||
Sbjct: 193 cgacgagctgcttgccggagtcgctggtgatgcgcatggagaatggcgcctggaggcggt 134
Query: 428 ggccggagtccagccgccagatggacccccacgactcgcgcatcggcgtccacgacccgg 487
|| |||||||| || ||||||||||||||| |||||||||||||||| |||||||| |
Sbjct: 133 ggttggagtccatcctccagatggacccccaggactcgcgcatcggcgcccacgaccgcg 74
Query: 488 agttggcctccatgaggtccacctgcaccacgtcgccgtcgccgtcctcgaactcgacga 547
||||||||||| | | |||||| ||| || ||||||||| ||||||| |||||| |
Sbjct: 73 agttggcctccttcatgtccacttgcgtcaggtcgccgtccatgtcctcgtactcgatca 14
Query: 548 gcaccgccaggta 560
|||||||||||||
Sbjct: 13 gcaccgccaggta 1
>gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C08_F16, mRNA sequence
Length = 443
Score = 61.9 bits (31), Expect = 6e-010
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 349 gccgggatgacctggttggccaccagcgtcttgccggactcgttggtgatgcgcaggga 407
|||||||||| | |||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 71 gccgggatgatattgttggccatgagcgtcttgccggagtcgctggtgatgcgcaggga 13
>gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_C09_F18, mRNA sequence
Length = 377
Score = 38.2 bits (19), Expect = 0.008
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 518 cgtcgccgtcgccgtcctc 536
|||||||||||||||||||
Sbjct: 180 cgtcgccgtcgccgtcctc 162
>gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_G11_M22, mRNA
sequence
Length = 595
Score = 38.2 bits (19), Expect = 0.008
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 399 gcgcagggagaagggcgcg 417
|||||||||||||||||||
Sbjct: 73 gcgcagggagaagggcgcg 55
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1310
Number of Sequences: 8143
Number of extensions: 1310
Number of successful extensions: 408
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 5
length of query: 582
length of database: 4,702,463
effective HSP length: 16
effective length of query: 566
effective length of database: 4,572,175
effective search space: 2587851050
effective search space used: 2587851050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)