BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.3
(1600 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 161 2e-039
gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Aven... 44 4e-004
gb|CN817583.1|CN817583 HRO4463_E09_I17ZS5 Lib AA070E1X Aven... 40 0.006
gb|CN818286.1|CN818286 HRO4470_C04_F08ZS5 Lib AA070E1X Aven... 40 0.006
gb|CN819019.1|CN819019 HRO4474_C03_F06ZS5 Lib AA070E1X Aven... 40 0.006
gb|CN815039.1|CN815039 HRO4505_B11_C21ZS5 Lib AA071E1X Aven... 38 0.024
gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Aven... 38 0.024
gb|M73232.1|ASTATPASEH Avena sativa vacuolar H+-ATPase 16 k... 36 0.093
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 161 bits (81), Expect = 2e-039
Identities = 150/173 (86%)
Strand = Plus / Minus
Query: 668 actggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgttgttgg 727
|||||||||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||
Sbjct: 253 actggacgaaggagcggtagtcggtgttgggcctccagttggctgggatgatgttgttgg 194
Query: 728 cgacgagcgtcttgccggactcgttgcggatgcggatggagaagggcggctgcatgcggt 787
|||||||| ||||||||| ||| || |||||| |||||||| |||| ||| | |||||
Sbjct: 193 cgacgagctgcttgccggagtcgctggtgatgcgcatggagaatggcgcctggaggcggt 134
Query: 788 ggttggtgtccatgcgccagacggagccccaggactcgcgcatcggcgtccac 840
|||||| |||||| | ||||| ||| |||||||||||||||||||||| ||||
Sbjct: 133 ggttggagtccatcctccagatggacccccaggactcgcgcatcggcgcccac 81
Score = 34.2 bits (17), Expect = 0.37
Identities = 53/65 (81%)
Strand = Plus / Minus
Query: 868 ttggactccatcaggtccacctgcaccacgtcgccgtcgccgtcctcgtactccaccagc 927
|||| |||| ||| |||||| ||| || ||||||||| |||||||||||| | ||||
Sbjct: 71 ttggcctccttcatgtccacttgcgtcaggtcgccgtccatgtcctcgtactcgatcagc 12
Query: 928 accgc 932
|||||
Sbjct: 11 accgc 7
>gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C08_F16, mRNA sequence
Length = 443
Score = 44.1 bits (22), Expect = 4e-004
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 709 gccgggatgacgttgttggcgacgagcgtcttgccgga 746
|||||||||| |||||||| | |||||||||||||||
Sbjct: 71 gccgggatgatattgttggccatgagcgtcttgccgga 34
>gb|CN817583.1|CN817583 HRO4463_E09_I17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_E09_I17, mRNA sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 200 aatgaagatgatgatgatgataaa 223
||||| ||||||||||||||||||
Sbjct: 222 aatgatgatgatgatgatgataaa 199
>gb|CN818286.1|CN818286 HRO4470_C04_F08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C04_F08, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 200 aatgaagatgatgatgatgataaa 223
||||| ||||||||||||||||||
Sbjct: 133 aatgatgatgatgatgatgataaa 110
>gb|CN819019.1|CN819019 HRO4474_C03_F06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_C03_F06, mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 200 aatgaagatgatgatgatgataaa 223
||||| ||||||||||||||||||
Sbjct: 478 aatgatgatgatgatgatgataaa 455
>gb|CN815039.1|CN815039 HRO4505_B11_C21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B11_C21, mRNA sequence
Length = 417
Score = 38.2 bits (19), Expect = 0.024
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 709 gccgggatgacgttgttggcgacgagcgtcttgcc 743
|||||||||| |||||||| | ||||||||||||
Sbjct: 45 gccgggatgatattgttggccatgagcgtcttgcc 11
>gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_C09_F18, mRNA sequence
Length = 377
Score = 38.2 bits (19), Expect = 0.024
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 896 cgtcgccgtcgccgtcctc 914
|||||||||||||||||||
Sbjct: 180 cgtcgccgtcgccgtcctc 162
>gb|M73232.1|ASTATPASEH Avena sativa vacuolar H+-ATPase 16 kDa proteolipid subunit (vatp-P1)
mRNA, complete cds
Length = 821
Score = 36.2 bits (18), Expect = 0.093
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1477 acgagcgccgcggcggcg 1494
||||||||||||||||||
Sbjct: 198 acgagcgccgcggcggcg 181
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3465
Number of Sequences: 8143
Number of extensions: 3465
Number of successful extensions: 1126
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 11
length of query: 1600
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1583
effective length of database: 4,564,032
effective search space: 7224862656
effective search space used: 7224862656
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)