BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.1
(1293 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 167 3e-041
gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Aven... 38 0.019
gb|CN815579.1|CN815579 HRO4513_C03_E05ZS5 Lib AA071E1X Aven... 34 0.30
gb|CN816941.1|CN816941 HRO4526_E03_I06ZS5 Lib AA071E1X Aven... 34 0.30
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 167 bits (84), Expect = 3e-041
Identities = 150/172 (87%)
Strand = Plus / Plus
Query: 715 tgggcgccgatgcgcgagtcctggggctccgtctggcgcatggacaccaaccaccgcatg 774
|||||||||||||||||||||||||| ||| ||||| | |||||| ||||||||||| |
Sbjct: 82 tgggcgccgatgcgcgagtcctgggggtccatctggaggatggactccaaccaccgcctc 141
Query: 775 cagccgcccttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaggaac 834
||| |||| |||||||| |||||| || ||| ||||||||| ||||||||||| |||
Sbjct: 142 caggcgccattctccatgcgcatcaccagcgactccggcaagcagctcgtcgccaacaac 201
Query: 835 gtcatcccggccaactggaggcccaacaccttctaccgctccttcgtccagt 886
||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 202 atcatcccagccaactggaggcccaacaccgactaccgctccttcgtccagt 253
Score = 34.2 bits (17), Expect = 0.30
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 622 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 681
||||||||| | |||||||||||| ||||||||| || ||| |||||| ||| ||||
Sbjct: 7 gcggtgctgatcgagtacgaggacatggacggcgacctgacgcaagtggacatgaaggag 66
Query: 682 tccaa 686
||||
Sbjct: 67 gccaa 71
>gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_C09_F18, mRNA sequence
Length = 377
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 640 gaggacggcgacggcgacg 658
|||||||||||||||||||
Sbjct: 162 gaggacggcgacggcgacg 180
>gb|CN815579.1|CN815579 HRO4513_C03_E05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_C03_E05, mRNA sequence
Length = 690
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 886 tacagctagctagctag 902
|||||||||||||||||
Sbjct: 176 tacagctagctagctag 160
>gb|CN816941.1|CN816941 HRO4526_E03_I06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E03_I06, mRNA sequence
Length = 493
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1004 tgccgccgccgccgtcg 1020
|||||||||||||||||
Sbjct: 34 tgccgccgccgccgtcg 50
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3679
Number of Sequences: 8143
Number of extensions: 3679
Number of successful extensions: 1161
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 11
length of query: 1293
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1277
effective length of database: 4,572,175
effective search space: 5838667475
effective search space used: 5838667475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)