BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419405.2.1
         (1293 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820496.1|CN820496  HRO4413_A07_A13ZS5 Lib AA069E1X Aven...   167   3e-041
gb|CN815496.1|CN815496  HRO4512_C09_F18ZS5 Lib AA071E1X Aven...    38   0.019
gb|CN815579.1|CN815579  HRO4513_C03_E05ZS5 Lib AA071E1X Aven...    34   0.30 
gb|CN816941.1|CN816941  HRO4526_E03_I06ZS5 Lib AA071E1X Aven...    34   0.30 
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
           sequence
          Length = 642

 Score =  167 bits (84), Expect = 3e-041
 Identities = 150/172 (87%)
 Strand = Plus / Plus

                                                                       
Query: 715 tgggcgccgatgcgcgagtcctggggctccgtctggcgcatggacaccaaccaccgcatg 774
           |||||||||||||||||||||||||| ||| ||||| | |||||| ||||||||||| | 
Sbjct: 82  tgggcgccgatgcgcgagtcctgggggtccatctggaggatggactccaaccaccgcctc 141

                                                                       
Query: 775 cagccgcccttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaggaac 834
           ||| |||| |||||||| ||||||  || ||| |||||||||  |||||||||||  |||
Sbjct: 142 caggcgccattctccatgcgcatcaccagcgactccggcaagcagctcgtcgccaacaac 201

                                                               
Query: 835 gtcatcccggccaactggaggcccaacaccttctaccgctccttcgtccagt 886
            ||||||| |||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 202 atcatcccagccaactggaggcccaacaccgactaccgctccttcgtccagt 253

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 53/65 (81%)
 Strand = Plus / Plus

                                                                       
Query: 622 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 681
           ||||||||| | ||||||||||||   ||||||||| ||  ||| |||||| ||| ||||
Sbjct: 7   gcggtgctgatcgagtacgaggacatggacggcgacctgacgcaagtggacatgaaggag 66

                
Query: 682 tccaa 686
            ||||
Sbjct: 67  gccaa 71
>gb|CN815496.1|CN815496 HRO4512_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4512_C09_F18, mRNA sequence
          Length = 377

 Score = 38.2 bits (19), Expect = 0.019
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 640 gaggacggcgacggcgacg 658
           |||||||||||||||||||
Sbjct: 162 gaggacggcgacggcgacg 180
>gb|CN815579.1|CN815579 HRO4513_C03_E05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4513_C03_E05, mRNA sequence
          Length = 690

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 886 tacagctagctagctag 902
           |||||||||||||||||
Sbjct: 176 tacagctagctagctag 160
>gb|CN816941.1|CN816941 HRO4526_E03_I06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4526_E03_I06, mRNA sequence
          Length = 493

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1004 tgccgccgccgccgtcg 1020
            |||||||||||||||||
Sbjct: 34   tgccgccgccgccgtcg 50
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3679
Number of Sequences: 8143
Number of extensions: 3679
Number of successful extensions: 1161
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 11
length of query: 1293
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1277
effective length of database: 4,572,175
effective search space: 5838667475
effective search space used: 5838667475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)