BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.1
(989 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Aven... 62 1e-009
gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Aven... 62 1e-009
gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Aven... 62 1e-009
gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Aven... 62 1e-009
gb|CN818071.1|CN818071 HRO4472_B06_C12ZS5 Lib AA070E1X Aven... 60 4e-009
gb|CN819735.1|CN819735 HRO4403_E05_J09ZS5 Lib AA069E1X Aven... 54 2e-007
gb|CN820512.1|CN820512 HRO4413_C02_E03ZS5 Lib AA069E1X Aven... 54 2e-007
gb|CN819492.1|CN819492 HRO4406_G04_M08ZS5 Lib AA069E1X Aven... 50 4e-006
gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Aven... 46 6e-005
gb|CN821386.1|CN821386 HRO4424_G02_N04ZS5 Lib AA069E1X Aven... 46 6e-005
gb|CN817017.1|CN817017 HRO4527_D01_H01ZS5 Lib AA071E1X Aven... 40 0.004
gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Aven... 38 0.015
gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Aven... 38 0.015
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A11_A22, mRNA sequence
Length = 684
Score = 61.9 bits (31), Expect = 1e-009
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| |||||| |||||||| | ||| || |||
Sbjct: 323 gcctctgcaccgccatcaaggccaacgtccttggcatccacctcaacgtccccgtcgacc 382
Query: 291 tcagcctcctcgtcaactactgcggca 317
||| ||||||| ||||| | |||||||
Sbjct: 383 tcaccctcctcctcaaccattgcggca 409
Score = 34.2 bits (17), Expect = 0.23
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 110 ctgaagctgggcgtgtgcgccaacttgctgaac 142
|||||||||| ||||||||||| ||||||||
Sbjct: 205 ctgaagctggaggtgtgcgccaatgtgctgaac 237
>gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H01_O02, mRNA sequence
Length = 405
Score = 61.9 bits (31), Expect = 1e-009
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| |||||| |||||||| | ||| || |||
Sbjct: 27 gcctctgcaccgccatcaaggccaacgtccttggcatccacctcaacgtccccgtcgacc 86
Query: 291 tcagcctcctcgtcaactactgcggca 317
||| ||||||| ||||| | |||||||
Sbjct: 87 tcaccctcctcctcaaccattgcggca 113
>gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G06_M11, mRNA sequence
Length = 546
Score = 61.9 bits (31), Expect = 1e-009
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| |||||| |||||||| | ||| || |||
Sbjct: 169 gcctctgcaccgccatcaaggccaacgtccttggcatccacctcaacgtccccgtcgacc 228
Query: 291 tcagcctcctcgtcaactactgcggca 317
||| ||||||| ||||| | |||||||
Sbjct: 229 tcaccctcctcctcaaccattgcggca 255
Score = 34.2 bits (17), Expect = 0.23
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 110 ctgaagctgggcgtgtgcgccaacttgctgaac 142
|||||||||| ||||||||||| ||||||||
Sbjct: 51 ctgaagctggaggtgtgcgccaatgtgctgaac 83
>gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G03_N05, mRNA sequence
Length = 388
Score = 61.9 bits (31), Expect = 1e-009
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| |||||| |||||||| | ||| || |||
Sbjct: 29 gcctctgcaccgccatcaaggccaacgtccttggcatccacctcaacgtccccgtcgacc 88
Query: 291 tcagcctcctcgtcaactactgcggca 317
||| ||||||| ||||| | |||||||
Sbjct: 89 tcaccctcctcctcaaccattgcggca 115
>gb|CN818071.1|CN818071 HRO4472_B06_C12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_B06_C12, mRNA sequence
Length = 831
Score = 60.0 bits (30), Expect = 4e-009
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 567 atgcaggaatttccagactggcaaacatctgcattgagcgacgggctccacttcaccccg 626
|||||| | ||||| || ||||||||||||||||| ||||||| || || |||||||||
Sbjct: 730 atgcagaagtttcctgattggcaaacatctgcattatgcgacggacttcatttcaccccg 789
Query: 627 gtaggaaacaagatcctgttcgaggaggtg 656
| || |||||||| ||||||| ||||||
Sbjct: 790 ttcgggaacaagattttgttcgacgaggtg 819
>gb|CN819735.1|CN819735 HRO4403_E05_J09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_E05_J09, mRNA
sequence
Length = 407
Score = 54.0 bits (27), Expect = 2e-007
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 271 cctcaacctgcccatcaacctcagcctcctcgtcaactactgcggca 317
||||||| | |||||||| ||||||||| || |||||||||||||||
Sbjct: 11 cctcaacgtccccatcaagctcagcctcatcctcaactactgcggca 57
>gb|CN820512.1|CN820512 HRO4413_C02_E03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_C02_E03, mRNA
sequence
Length = 457
Score = 54.0 bits (27), Expect = 2e-007
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 271 cctcaacctgcccatcaacctcagcctcctcgtcaactactgcggca 317
||||||| | |||||||| ||||||||| || |||||||||||||||
Sbjct: 23 cctcaacgtccccatcaagctcagcctcatcctcaactactgcggca 69
>gb|CN819492.1|CN819492 HRO4406_G04_M08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_G04_M08, mRNA
sequence
Length = 420
Score = 50.1 bits (25), Expect = 4e-006
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 281 cccatcaacctcagcctcctcgtcaactactgcggca 317
|||||||| ||||||||| || |||||||||||||||
Sbjct: 14 cccatcaagctcagcctcatcctcaactactgcggca 50
>gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A03_A05, mRNA sequence
Length = 374
Score = 46.1 bits (23), Expect = 6e-005
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||| | ||| |||||| |||||||| | || || |||
Sbjct: 17 gcctctgcaccgccatcaaggccaatgtcctaggcatccacctcaacgtcccggtcgacc 76
Query: 291 tcagcctcctcgtcaactactgcggca 317
||| ||||||| ||||| | |||||||
Sbjct: 77 tcaacctcctcctcaaccattgcggca 103
>gb|CN821386.1|CN821386 HRO4424_G02_N04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G02_N04, mRNA
sequence
Length = 423
Score = 46.1 bits (23), Expect = 6e-005
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 271 cctcaacctgcccatcaacctcagcctcctcgtcaactactgcggca 317
||||||| | |||||| | ||||||||| || |||||||||||||||
Sbjct: 7 cctcaacgtccccatctagctcagcctcatcctcaactactgcggca 53
>gb|CN817017.1|CN817017 HRO4527_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D01_H01, mRNA sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.004
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 250 ggccaacggcctgggcatcaacctcaac 277
|||||||| ||| |||||||||||||||
Sbjct: 112 ggccaacgtcctcggcatcaacctcaac 139
>gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D08_H16, mRNA sequence
Length = 419
Score = 38.2 bits (19), Expect = 0.015
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 221 gcggcggtgggcctctgcaccgtcctcagggccaa 255
||||||||| |||||||||||| | ||| ||||||
Sbjct: 28 gcggcggtgtgcctctgcaccgccatcaaggccaa 62
>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
sequence
Length = 457
Score = 38.2 bits (19), Expect = 0.015
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 221 gcggcggtgggcctctgcaccgtcctcagggccaa 255
||||||||| |||||||||||| | ||| ||||||
Sbjct: 66 gcggcggtgtgcctctgcaccgccatcaaggccaa 100
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2237
Number of Sequences: 8143
Number of extensions: 2237
Number of successful extensions: 703
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 20
length of query: 989
length of database: 4,702,463
effective HSP length: 16
effective length of query: 973
effective length of database: 4,572,175
effective search space: 4448726275
effective search space used: 4448726275
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)