BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2418946.2.2
         (710 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818093.1|CN818093  HRO4456_F01_K02ZS5 Lib AA070E1X Aven...    50   3e-006
gb|CN818432.1|CN818432  HRO4460_F09_K18ZS5 Lib AA070E1X Aven...    50   3e-006
gb|AF118559.1|AF118559  Avena fatua puroindoline precursor, ...    38   0.010

>gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4456_F01_K02, mRNA sequence
          Length = 414

 Score = 50.1 bits (25), Expect = 3e-006
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 462 ttccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
           ||||||||  ||||||||||||| || |||||||| || || || |||||||||||
Sbjct: 44  ttccagacgcggatgctgttcaatcaagcgttcagtagaggacttcagatctcccg 99



>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
          Length = 869

 Score = 50.1 bits (25), Expect = 3e-006
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccg 517
           ||||||||||| || ||||||||||| || || |||||||||||
Sbjct: 612 atgctgttcaatcaagcgttcagcagaggacttcagatctcccg 655



>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
          Length = 571

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  gcggccgcccgggcaggta 19
          |||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggta 23



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1014
Number of Sequences: 8143
Number of extensions: 1014
Number of successful extensions: 280
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 3
length of query: 710
length of database: 4,702,463
effective HSP length: 16
effective length of query: 694
effective length of database: 4,572,175
effective search space: 3173089450
effective search space used: 3173089450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)