BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418879.2.3
(1694 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Aven... 309 4e-084
gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Aven... 234 2e-061
gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Aven... 172 7e-043
gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Aven... 161 3e-039
gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Aven... 135 1e-031
gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA ... 119 9e-027
gb|CN817558.1|CN817558 HRO4463_F11_K21ZS5 Lib AA070E1X Aven... 36 0.099
gb|CN817789.1|CN817789 HRO4461_A09_B17ZS5 Lib AA070E1X Aven... 36 0.099
gb|CN818265.1|CN818265 HRO4470_D05_H10ZS5 Lib AA070E1X Aven... 36 0.099
gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Aven... 36 0.099
gb|CN819274.1|CN819274 HRO4452_B02_C04ZS5 Lib AA070E1X Aven... 36 0.099
gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Aven... 36 0.099
>gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_B12_D24, mRNA sequence
Length = 718
Score = 309 bits (156), Expect = 4e-084
Identities = 192/204 (94%)
Strand = Plus / Minus
Query: 440 tgccttgtcgaacttgaggggcttcaccacctcccaggtgaagtcggcgtcgtcacggcc 499
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 221 tgccttgtcaaacttgaggggcttcaccacctcccaggtgaagtcggggtcctcacggcc 162
Query: 500 gaaatggccgtaagcggcggtcttgatgaacctgttgccgcccttcttcaggtcgaggtt 559
||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 161 gaagtggccgtaggcggcggtcttgatgaacctgttcccgcccttcttgaggtcaaggtt 102
Query: 560 gatgctgatcatcccgggcctgaagtcgaagttctccttcacgatcttgaggatctcctt 619
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct: 101 gatgctgatcatcccgggcctgaagtcgaagttctccttcacgagcttcaggatctccct 42
Query: 620 gtcggggatcgtgccggtgccgta 643
|||||||||| |||||||||||||
Sbjct: 41 gtcggggatcttgccggtgccgta 18
>gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_H09_P17, mRNA sequence
Length = 608
Score = 234 bits (118), Expect = 2e-061
Identities = 295/354 (83%)
Strand = Plus / Minus
Query: 430 cttaagccgatgccttgtcgaacttgaggggcttcaccacctcccaggtgaagtcggcgt 489
||||||| || | |||||| |||||||| |||||||| ||||||||||||||||| || |
Sbjct: 368 cttaagcagacgtcttgtcaaacttgagaggcttcacaacctcccaggtgaagtcagcat 309
Query: 490 cgtcacggccgaaatggccgtaagcggcggtcttgatgaacctgttgccgcccttcttca 549
| ||||| || || || ||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct: 308 catcacgcccaaagtgaccgtaggcagcggtcttgatgaacctattgccacccttcttca 249
Query: 550 ggtcgaggttgatgctgatcatcccgggcctgaagtcgaagttctccttcacgatcttga 609
||| |||||||||||||||||||| ||||| ||||| ||||||||||| || | ||| |
Sbjct: 248 agtcaaggttgatgctgatcatcccaggcctaaagtcaaagttctcctttaccagcttca 189
Query: 610 ggatctccttgtcggggatcgtgccggtgccgtacgagttgacgaacacggacaggggct 669
|||||||| |||| || ||| |||| ||||| || |||| || ||||| |||| |||||
Sbjct: 188 ggatctccctgtcaggaatcttgcccgtgccataggagtctacaaacacagacaagggct 129
Query: 670 ccggcacgccgatggcgtacgacacctgcacgaggcagcggcgggcgaggccgctggcca 729
| ||||| || ||||| ||||| | |||||||| | ||||| || || |||||||| |
Sbjct: 128 caggcacaccaatggcatacgagatctgcacgatgacacggcgtgcaagcccgctggcaa 69
Query: 730 cgatgctcttggcggcctgcctggccacgtaggcgccgctgcggtccaccttgg 783
| ||||||||||| ||||||||||| | |||||| || |||||||| |||||||
Sbjct: 68 caatgctcttggcagcctgcctggcaatgtaggcaccactgcggtcaaccttgg 15
>gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B02_C03, mRNA sequence
Length = 656
Score = 172 bits (87), Expect = 7e-043
Identities = 180/211 (85%)
Strand = Plus / Minus
Query: 430 cttaagccgatgccttgtcgaacttgaggggcttcaccacctcccaggtgaagtcggcgt 489
||||||| || | |||||| |||||||| |||||||| ||||||||||||||||| || |
Sbjct: 238 cttaagcagacgtcttgtcaaacttgagaggcttcacaacctcccaggtgaagtcagcat 179
Query: 490 cgtcacggccgaaatggccgtaagcggcggtcttgatgaacctgttgccgcccttcttca 549
| ||||| || || || ||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct: 178 catcacgcccaaagtgaccgtaggcagcggtcttgatgaacctattgccacccttcttca 119
Query: 550 ggtcgaggttgatgctgatcatcccgggcctgaagtcgaagttctccttcacgatcttga 609
||| |||||||||||||||||||| ||||| ||||| ||||||||||| || | ||| |
Sbjct: 118 agtcaaggttgatgctgatcatcccaggcctaaagtcaaagttctcctttaccagcttca 59
Query: 610 ggatctccttgtcggggatcgtgccggtgcc 640
|||||||| |||| || ||| |||| |||||
Sbjct: 58 ggatctccctgtcaggaatcttgcccgtgcc 28
>gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D02_G04, mRNA
sequence
Length = 515
Score = 161 bits (81), Expect = 3e-039
Identities = 147/169 (86%)
Strand = Plus / Minus
Query: 430 cttaagccgatgccttgtcgaacttgaggggcttcaccacctcccaggtgaagtcggcgt 489
||||||| || | |||||| |||||||| |||||||| ||||||||||||||||| || |
Sbjct: 181 cttaagcagacgtcttgtcaaacttgagaggcttcacaacctcccaggtgaagtcagcat 122
Query: 490 cgtcacggccgaaatggccgtaagcggcggtcttgatgaacctgttgccgcccttcttca 549
| ||||| || || || ||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct: 121 catcacgcccaaagtgaccgtaggcagcggtcttgatgaacctattgccacccttcttca 62
Query: 550 ggtcgaggttgatgctgatcatcccgggcctgaagtcgaagttctcctt 598
||| |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 61 agtcaaggttgatgctgatcatcccaggcctaaagtcaaagttctcctt 13
>gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_H04_O07, mRNA sequence
Length = 317
Score = 135 bits (68), Expect = 1e-031
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 440 tgccttgtcgaacttgaggggcttcaccacctcccaggtgaagtcggcgtcgtcacggcc 499
||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct: 111 tgccttgtcaaacttgaggggcttcaccacctcccatgtgaagtcggggtcctcacggcc 52
Query: 500 gaaatggccgtaagcggcggtcttgatgaacctgtt 535
|| |||||||| |||||||||||||||||||||||
Sbjct: 51 aaagtggccgtaggcggcggtcttgatgaacctgtt 16
>gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1421_WHE03E02, mRNA sequence
Length = 275
Score = 119 bits (60), Expect = 9e-027
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 544 tcttcaggtcgaggttgatgctgatcatcccgggcctgaagtcgaagttctccttcacga 603
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| || |
Sbjct: 132 tcttcaggtcgaggttgatgatgatcatgccgggcctgaagtcaaagttctccttgacaa 73
Query: 604 tcttgaggatctccttgtcggggatcgtgccggtgccgta 643
| |||||||| |||||||| |||||| |||| ||||||||
Sbjct: 72 tgttgaggatatccttgtcagggatcctgcctgtgccgta 33
Score = 67.9 bits (34), Expect = 3e-011
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 451 acttgaggggcttcaccacctcccaggtgaagtc 484
||||||||||||||||||||||||||||||||||
Sbjct: 228 acttgaggggcttcaccacctcccaggtgaagtc 195
>gb|CN817558.1|CN817558 HRO4463_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_F11_K21, mRNA sequence
Length = 401
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 343 acacacacatccagcagcagca 364
|||||||||| |||||||||||
Sbjct: 215 acacacacatgcagcagcagca 194
>gb|CN817789.1|CN817789 HRO4461_A09_B17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_A09_B17, mRNA sequence
Length = 310
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 343 acacacacatccagcagcagca 364
|||||||||| |||||||||||
Sbjct: 116 acacacacatgcagcagcagca 95
>gb|CN818265.1|CN818265 HRO4470_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_D05_H10, mRNA sequence
Length = 387
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 343 acacacacatccagcagcagca 364
|||||||||| |||||||||||
Sbjct: 279 acacacacatgcagcagcagca 258
>gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A01_B02, mRNA sequence
Length = 600
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 343 acacacacatccagcagcagca 364
|||||||||| |||||||||||
Sbjct: 95 acacacacatgcagcagcagca 116
>gb|CN819274.1|CN819274 HRO4452_B02_C04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_B02_C04, mRNA sequence
Length = 317
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 343 acacacacatccagcagcagca 364
|||||||||| |||||||||||
Sbjct: 190 acacacacatgcagcagcagca 169
>gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E01_I02, mRNA
sequence
Length = 387
Score = 36.2 bits (18), Expect = 0.099
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 343 acacacacatccagcagcagca 364
|||||||||| |||||||||||
Sbjct: 278 acacacacatgcagcagcagca 257
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4157
Number of Sequences: 8143
Number of extensions: 4157
Number of successful extensions: 1156
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 16
length of query: 1694
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1677
effective length of database: 4,564,032
effective search space: 7653881664
effective search space used: 7653881664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)