BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418879.2.1
(1083 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Aven... 250 2e-066
gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Aven... 200 2e-051
gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Aven... 143 4e-034
gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Aven... 135 9e-032
gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Aven... 119 5e-027
gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA ... 90 5e-018
gb|CN820015.1|CN820015 HRO4410_B01_C02ZS5 Lib AA069E1X Aven... 38 0.016
gb|CN816969.1|CN816969 HRO4526_G11_M22ZS5 Lib AA071E1X Aven... 34 0.25
gb|CN819718.1|CN819718 HRO4403_C11_F21ZS5 Lib AA069E1X Aven... 34 0.25
>gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_B12_D24, mRNA sequence
Length = 718
Score = 250 bits (126), Expect = 2e-066
Identities = 174/190 (91%)
Strand = Plus / Plus
Query: 463 cctacggcaccgggaccatccccgacaaggagatcctaaagatcgtcaaggagaacttcg 522
||||||||||||| | |||||||||| ||||||||| ||| |||| |||||||||||||
Sbjct: 16 cctacggcaccggcaagatccccgacagggagatcctgaagctcgtgaaggagaacttcg 75
Query: 523 acttcaggccagggatgatcaccatcaacctcgacctcaagaagggcggcaacaggttca 582
|||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct: 76 acttcaggcccgggatgatcagcatcaaccttgacctcaagaagggcgggaacaggttca 135
Query: 583 tcaagaccgccgcatacggccactttggccgtgacgacgccgacttcacctgggaggtgg 642
||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 136 tcaagaccgccgcctacggccacttcggccgtgaggaccccgacttcacctgggaggtgg 195
Query: 643 tcaagcccct 652
| ||||||||
Sbjct: 196 tgaagcccct 205
>gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_H09_P17, mRNA sequence
Length = 608
Score = 200 bits (101), Expect = 2e-051
Identities = 269/325 (82%)
Strand = Plus / Plus
Query: 325 ccaaggtggaccgcagcggggcctacgtcgccaggcaggccgccaagagcatcgtggcca 384
||||||| |||||||| || |||||| | ||||||||||| ||||||||||| || ||||
Sbjct: 15 ccaaggttgaccgcagtggtgcctacattgccaggcaggctgccaagagcattgttgcca 74
Query: 385 gcggcctcgcccgccgctgcctcgtgcaggtgtcctacgccatcggcgtgccggagcccc 444
|||| || || ||||| | |||||||| | || || ||||| || ||||| ||||||
Sbjct: 75 gcgggcttgcacgccgtgtcatcgtgcagatctcgtatgccattggtgtgcctgagccct 134
Query: 445 tgtccgtgttcgtcgactcctacggcaccgggaccatccccgacaaggagatcctaaaga 504
|||| ||||| || |||||||| ||||| || | || || |||| ||||||||| |||
Sbjct: 135 tgtctgtgtttgtagactcctatggcacgggcaagattcctgacagggagatcctgaagc 194
Query: 505 tcgtcaaggagaacttcgacttcaggccagggatgatcaccatcaacctcgacctcaaga 564
| || ||||||||||| ||||| ||||| |||||||||| ||||||||| ||| | ||||
Sbjct: 195 tggtaaaggagaactttgactttaggcctgggatgatcagcatcaaccttgacttgaaga 254
Query: 565 agggcggcaacaggttcatcaagaccgccgcatacggccactttggccgtgacgacgccg 624
|||| ||||| ||||||||||||||||| || ||||| |||||||| ||||| || || |
Sbjct: 255 agggtggcaataggttcatcaagaccgctgcctacggtcactttgggcgtgatgatgctg 314
Query: 625 acttcacctgggaggtggtcaagcc 649
|||||||||||||||| || |||||
Sbjct: 315 acttcacctgggaggttgtgaagcc 339
>gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B02_C03, mRNA sequence
Length = 656
Score = 143 bits (72), Expect = 4e-034
Identities = 141/164 (85%)
Strand = Plus / Plus
Query: 486 gacaaggagatcctaaagatcgtcaaggagaacttcgacttcaggccagggatgatcacc 545
|||| ||||||||| ||| | || ||||||||||| ||||| ||||| |||||||||| |
Sbjct: 46 gacagggagatcctgaagctggtaaaggagaactttgactttaggcctgggatgatcagc 105
Query: 546 atcaacctcgacctcaagaagggcggcaacaggttcatcaagaccgccgcatacggccac 605
|||||||| ||| | |||||||| ||||| ||||||||||||||||| || ||||| |||
Sbjct: 106 atcaaccttgacttgaagaagggtggcaataggttcatcaagaccgctgcctacggtcac 165
Query: 606 tttggccgtgacgacgccgacttcacctgggaggtggtcaagcc 649
||||| ||||| || || ||||||||||||||||| || |||||
Sbjct: 166 tttgggcgtgatgatgctgacttcacctgggaggttgtgaagcc 209
>gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D02_G04, mRNA
sequence
Length = 515
Score = 135 bits (68), Expect = 9e-032
Identities = 122/140 (87%)
Strand = Plus / Plus
Query: 510 aaggagaacttcgacttcaggccagggatgatcaccatcaacctcgacctcaagaagggc 569
||||||||||| ||||| ||||| |||||||||| ||||||||| ||| | ||||||||
Sbjct: 13 aaggagaactttgactttaggcctgggatgatcagcatcaaccttgacttgaagaagggt 72
Query: 570 ggcaacaggttcatcaagaccgccgcatacggccactttggccgtgacgacgccgacttc 629
||||| ||||||||||||||||| || ||||| |||||||| ||||| || || ||||||
Sbjct: 73 ggcaataggttcatcaagaccgctgcctacggtcactttgggcgtgatgatgctgacttc 132
Query: 630 acctgggaggtggtcaagcc 649
||||||||||| || |||||
Sbjct: 133 acctgggaggttgtgaagcc 152
>gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_H04_O07, mRNA sequence
Length = 317
Score = 119 bits (60), Expect = 5e-027
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 573 aacaggttcatcaagaccgccgcatacggccactttggccgtgacgacgccgacttcacc 632
||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 16 aacaggttcatcaagaccgccgcctacggccactttggccgtgaggaccccgacttcaca 75
Query: 633 tgggaggtggtcaagcccct 652
||||||||||| ||||||||
Sbjct: 76 tgggaggtggtgaagcccct 95
>gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1421_WHE03E02, mRNA sequence
Length = 275
Score = 89.7 bits (45), Expect = 5e-018
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 480 atccccgacaaggagatcctaaagatcgtcaaggagaacttcgacttcaggccagggatg 539
||||| |||||||| ||||| || || |||||||||||||| ||||||||||| || |||
Sbjct: 48 atccctgacaaggatatcctcaacattgtcaaggagaactttgacttcaggcccggcatg 107
Query: 540 atcaccatcaacctcgacctcaaga 564
|||| ||||||||||||||| ||||
Sbjct: 108 atcatcatcaacctcgacctgaaga 132
Score = 50.1 bits (25), Expect = 4e-006
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 624 gacttcacctgggaggtggtcaagcccct 652
|||||||||||||||||||| ||||||||
Sbjct: 195 gacttcacctgggaggtggtgaagcccct 223
>gb|CN820015.1|CN820015 HRO4410_B01_C02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B01_C02, mRNA
sequence
Length = 513
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 739 ttgctgctgctgctgccgc 757
|||||||||||||||||||
Sbjct: 293 ttgctgctgctgctgccgc 311
>gb|CN816969.1|CN816969 HRO4526_G11_M22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G11_M22, mRNA sequence
Length = 324
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 721 tgctgatacctgcaagg 737
|||||||||||||||||
Sbjct: 259 tgctgatacctgcaagg 275
>gb|CN819718.1|CN819718 HRO4403_C11_F21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C11_F21, mRNA
sequence
Length = 876
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 738 attgctgctgctgctgc 754
|||||||||||||||||
Sbjct: 384 attgctgctgctgctgc 368
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3368
Number of Sequences: 8143
Number of extensions: 3368
Number of successful extensions: 1048
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 18
length of query: 1083
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1067
effective length of database: 4,572,175
effective search space: 4878510725
effective search space used: 4878510725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)