BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.2
(1617 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814661.1|CN814661 HRO4501_B06_C11ZS5 Lib AA071E1X Aven... 833 0.0
gb|CN819702.1|CN819702 HRO4403_B07_D13ZS5 Lib AA069E1X Aven... 62 2e-009
gb|CN814657.1|CN814657 HRO4501_B02_C03ZS5 Lib AA071E1X Aven... 34 0.37
gb|CN818751.1|CN818751 HRO4468_C05_E10ZS5 Lib AA070E1X Aven... 34 0.37
>gb|CN814661.1|CN814661 HRO4501_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_B06_C11, mRNA sequence
Length = 842
Score = 833 bits (420), Expect = 0.0
Identities = 728/828 (87%), Gaps = 2/828 (0%)
Strand = Plus / Minus
Query: 501 ggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgtcccaca 560
||||||||||||| ||| |||| ||||||||||| |||| |||| | ||||||||
Sbjct: 836 ggagcaagaccaatgtattccaatgccttgaccatattgcgagtaacaagtcgtcccacg 777
Query: 561 gaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggc 620
| ||||||||||| ||||||| || ||||| |||| ||||||||||||||||||||||
Sbjct: 776 gtagtcaaacggaaactactcaatgaaaatcgacttg-atccaagggcaagtaccaaggc 718
Query: 621 aagggagaatcttcagcaagatccttatcccaaacaacctcaaacccggcgtcttttact 680
|| ||||||||| ||||||||||||||||||||| |||||||||||| || ||||| ||
Sbjct: 717 aatggagaatctacagcaagatccttatcccaaataacctcaaaccctgcatctttaaca 658
Query: 681 gcctggagacattgccgagtgcttctgatatctggcaggccattgccaagctcaatttca 740
|| || ||||||||| ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 657 gcttgaagacattgctgagtgcttctgatatctggtagaccattaccaagctcaatttca 598
Query: 741 tccttgatccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccactcg 800
||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 597 tccttaatcctcttgtgggttgcattgtttggatcatagtgatcagtaatgcaccactca 538
Query: 801 tacacggcaaagcactggccaggcttcaacacacgatatatctccttgtagcaaccaact 860
|| || ||||| ||||| ||||| || || ||||| || |||||||| ||||| |||||
Sbjct: 537 tatacagcaaaacactgcccaggttttaatacacggtagatctccttatagcagccaacc 478
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 477 ggatcaggtgcatgacatgttgcctcaatggcataaacagcatcaaaagtgttatcggag 418
Query: 921 aacggcatcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaa 980
|| ||||| ||||||||||| ||||||||||| ||||| |||||||||| |||||| | |
Sbjct: 417 aaaggcatattcatgaagtctgccttgacaaagtcacaagttccactaagtcctgccaga 358
Query: 981 cggttgagctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaa 1040
|| ||||||||||||||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 357 cgattgagctcctttcccctagttatctgatagtcgttgttgttcaatccggtaactgag 298
Query: 1041 gttgagctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaa 1100
|||||||||||||| ||||| ||||| | |||||||||||||||||||||||| || |||
Sbjct: 297 gttgagctaaatctggcaatctctcttaatggtccacctattccacagcccacgtccaaa 238
Query: 1101 accttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatg 1160
|||||||| ||||||||||| |||| || ||||| ||||||||||| ||||| ||||||
Sbjct: 237 accttcatccctggtttcaactcaagctgaagggccagaaaatgctcgtgtcgtttgatg 178
Query: 1161 ctttcacgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaacca 1220
||||| | ||| ||||| |||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 177 ctttcccttaaagattccccattccacctgtgagcaaagtgaaaagattcaccccagccg 118
Query: 1221 tactcatagaagctagtggcaagatcatagtatttattaaccatatcagtatagttggac 1280
||||||||||||||||| | |||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 117 tactcatagaagctagtagaaagatcgtagtatttattaaccatatcagtgtagttgaac 58
Query: 1281 ttccttgcttcctccttccctccatagtatccatgatatttctcatac 1328
||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct: 57 ttccttgcttcctccttccctccgtagtatcca-gaaatttctcatac 11
>gb|CN819702.1|CN819702 HRO4403_B07_D13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B07_D13, mRNA
sequence
Length = 415
Score = 61.9 bits (31), Expect = 2e-009
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 386 aagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttctt 436
||||||||||||||| | |||||||||||| || |||||||| ||||||||
Sbjct: 84 aagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttctt 34
>gb|CN814657.1|CN814657 HRO4501_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_B02_C03, mRNA sequence
Length = 652
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctct 1066
|||||||||||||||||
Sbjct: 335 aatcttgcaatttctct 319
>gb|CN818751.1|CN818751 HRO4468_C05_E10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_C05_E10, mRNA sequence
Length = 811
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 69 accatgctgcttaaaca 85
|||||||||||||||||
Sbjct: 233 accatgctgcttaaaca 249
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4066
Number of Sequences: 8143
Number of extensions: 4066
Number of successful extensions: 1133
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 5
length of query: 1617
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1600
effective length of database: 4,564,032
effective search space: 7302451200
effective search space used: 7302451200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)