BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405341.2.2
(1164 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 42 0.001
gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene ... 38 0.017
gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Aven... 34 0.27
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete sequence
Length = 16091
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 458 tcagactttggacttgcaaag 478
|||||||||||||||||||||
Sbjct: 11196 tcagactttggacttgcaaag 11216
>gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene cluster, complete
sequence
Length = 10607
Score = 38.2 bits (19), Expect = 0.017
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 458 tcagactttggacttgcaaagct 480
||||||||||| |||||||||||
Sbjct: 3345 tcagactttggccttgcaaagct 3367
>gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_A08_A15, mRNA sequence
Length = 831
Score = 34.2 bits (17), Expect = 0.27
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 581 gatgtctacagttttggggtt 601
||||| |||||||||||||||
Sbjct: 219 gatgtttacagttttggggtt 239
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2633
Number of Sequences: 8143
Number of extensions: 2633
Number of successful extensions: 782
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 8
length of query: 1164
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1148
effective length of database: 4,572,175
effective search space: 5248856900
effective search space used: 5248856900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)