BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815408.1|CN815408 HRO4509_C11_E21ZS5 Lib AA071E1X Aven... 517 e-147
gb|CN819629.1|CN819629 HRO4402_D05_G10ZS5 Lib AA069E1X Aven... 416 e-116
gb|CN816540.1|CN816540 HRO4521_H08_O15ZS5 Lib AA071E1X Aven... 406 e-113
gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Aven... 236 4e-062
gb|CN816740.1|CN816740 HRO4524_C03_F06ZS5 Lib AA071E1X Aven... 34 0.26
>gb|CN815408.1|CN815408 HRO4509_C11_E21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C11_E21, mRNA sequence
Length = 894
Score = 517 bits (261), Expect = e-147
Identities = 624/745 (83%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||| |||||||||| ||||| ||| |||||||||||||| || ||| |||||||
Sbjct: 758 atctcgtttggactattccagcgtttatgagcttctgaatcttctgtgcaacaccagggt 699
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
||| || || | ||| || || || ||||||||||||||||| | | ||||||| ||
Sbjct: 698 ccttaagatgatgctgagcagcactagggttctcctggaaatccatcaatacctgtcgca 639
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
|||||||||||||||| || |||||| |||||||| ||||||||||| ||||| | |
Sbjct: 638 tgatagggtcggtaaggattccctggatttctgggtcctgcatagctttactctgtttct 579
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || || || ||||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 578 cctgtaagtcctcctgacttatatcacccctgttagccttgttaatctgctcaatacacc 519
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
|||| | ||||||||||||||| ||||| ||||| || ||||||| ||||| || || |
Sbjct: 518 tccttataccatcaagcagttcttggttattcggatcgtgcttcaacccagcttggtaag 459
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||| |||| |||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 458 tttccattgccttctcatgttctttcatgaaaaactgaattgcaccttttcttgtatacc 399
Query: 675 ctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggca 734
|||| | |||||| |||||||| |||| |||||| || ||||||||||||||||||||||
Sbjct: 398 ctttggagaaggttgggtctagctcaatacacttttcagcatctttaagaccttcaggca 339
Query: 735 tggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggt 794
||||||| |||||||||||||| ||||||||||||||||| ||| || |||||| ||||
Sbjct: 338 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttaacatccttagggt 279
Query: 795 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 854
| ||| |||||||||| |||| || |||||||||||||| || ||||| | |||||| |
Sbjct: 278 tcctcctgagagcctcattgtaatgctttattgcttctggatacttttgttgcttgaaca 219
Query: 855 actcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgct 914
||| || ||||||||||||||||||||||||| || || ||||| |||||||||||||
Sbjct: 218 tctcattacctttctctctctcctcatctgctaccttcgggtcataatactcttgttgct 159
Query: 915 ccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgat 974
| || ||||| || || ||||||||||||| | | |||| |||||||| || |||||||
Sbjct: 158 ctaagtctttctttgccttctcagcctcatttagccttttgagagtgtcaggattccgat 99
Query: 975 gctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttag 1034
|||||||||||||||||||| | ||||||||||||||||| | || || ||| ||||||
Sbjct: 98 gctcagttagagccttctggaaagtctcgatggcaatatcgtagtctttggagttcttag 39
Query: 1035 caagcttgactagagctgttccttt 1059
| || ||| | ||||| ||||||||
Sbjct: 38 ccagtttggccagagcagttccttt 14
>gb|CN819629.1|CN819629 HRO4402_D05_G10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D05_G10, mRNA
sequence
Length = 766
Score = 416 bits (210), Expect = e-116
Identities = 498/594 (83%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||| |||||||||| ||||| ||| |||||||||||||| || ||| |||||||
Sbjct: 594 atctcgtttggactattccagcgtttatgagcttctgaatcttctgtgcaacaccagggt 535
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
||| || || | ||| || || || ||||||||||||||||| | | ||||||| ||
Sbjct: 534 ccttaagatgatgctgagcagcactagggttctcctggaaatccatcaatacctgtcgca 475
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
|||||||||||||||| || |||||| |||||||| ||||||||||| ||||| | |
Sbjct: 474 tgatagggtcggtaaggattccctggatttctgggtcctgcatagctttactctgtttct 415
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || || || ||||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 414 cctgtaagtcctcctgacttatatcacccctgttagccttgttaatctgctcaatacacc 355
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
|||| | ||||||||||||||| ||||| ||||| || ||||||| ||||| || || |
Sbjct: 354 tccttataccatcaagcagttcttggttattcggatcgtgcttcaacccagcttggtaag 295
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||| |||| |||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 294 tttccattgccttctcatgttctttcatgaaaaactgaattgcaccttttcttgtatacc 235
Query: 675 ctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggca 734
|||| | |||||| |||||||| |||| |||||| || ||||||||||||||||||||||
Sbjct: 234 ctttggagaaggttgggtctagctcaatacacttttcagcatctttaagaccttcaggca 175
Query: 735 tggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggt 794
||||||| |||||||||||||| ||||||||||||||||| ||| || |||||| ||||
Sbjct: 174 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttaacatccttagggt 115
Query: 795 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 854
| ||| |||||||||| |||| || |||||||||||||| || ||||| | |||||| |
Sbjct: 114 tcctcctgagagcctcattgtaatgctttattgcttctggatacttttgttgcttgaaca 55
Query: 855 actcgttgcctttctctctctcctcatctgctaattttggatcatagtactctt 908
||| || ||||||||||||||||||||||||| || || ||||| |||||||
Sbjct: 54 tctcattacctttctctctctcctcatctgctaccttcgggtcataatactctt 1
>gb|CN816540.1|CN816540 HRO4521_H08_O15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_H08_O15, mRNA sequence
Length = 771
Score = 406 bits (205), Expect = e-113
Identities = 481/573 (83%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||| |||||||||| ||||| ||| |||||||||||||| || ||| ||||| |
Sbjct: 602 atctcgtttggactattccagcgtttatgagcttctgaatcttctgtgcaacaccaggat 543
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
||| || || | ||| || || || ||||||||||||||||| | | ||||||| ||
Sbjct: 542 ccttaagatgatgctgagctgcactagggttctcctggaaatccatcaatacctgtcgca 483
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
||||||| |||||||| ||| |||||| |||||||| ||||||||||| ||||| | |
Sbjct: 482 tgataggatcggtaaggatgccctggatttctgggtcctgcatagctttactctgtttct 423
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || || || ||||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 422 cctgtaagtcctcctgacttatatcacccctgttagccttgttaatctgctcaatacacc 363
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
|||| | ||||||||||||||| ||||| ||||| || ||||||| ||||| || || |
Sbjct: 362 tccttataccatcaagcagttcttggttattcggatcgtgcttcaacccagcttggtaag 303
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||| |||| |||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 302 tttccattgccttctcatgttctttcatgaaaaactgaattgcaccttttcttgtatacc 243
Query: 675 ctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggca 734
|||| | |||||| ||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct: 242 ctttggagaaggttgggtctagttcaatacacttttcagcatctttaagaccttcaggca 183
Query: 735 tggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggt 794
||||||| |||||||||||||| |||||||| |||||||| ||| || |||||| ||||
Sbjct: 182 tggctcccaacttggtgtagcatgcagccctgttgctgtacaccttaacatccttagggt 123
Query: 795 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 854
| ||| |||||||||| |||| || |||||||||||||| || ||||| | |||||| |
Sbjct: 122 tcctcctgagagcctcattgtaatgctttattgcttctggatacttttgttgcttgaaca 63
Query: 855 actcgttgcctttctctctctcctcatctgcta 887
||| || |||||||||||||||||||||||||
Sbjct: 62 tctcattacctttctctctctcctcatctgcta 30
>gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D07_G13, mRNA sequence
Length = 725
Score = 236 bits (119), Expect = 4e-062
Identities = 320/387 (82%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
||||| |||||||||| ||||| ||| |||||||||||||| || ||| |||||||
Sbjct: 197 atctcgtttggactattccagcgtttatgagcttctgaatcttctgtgcaacaccagggt 256
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
||| || || | ||| || || || ||||||||||||||||| | | ||||||| ||
Sbjct: 257 ccttaagatgatgctgagcagcactagggttctcctggaaatccatcaatacctgtcgca 316
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
|||||||||||||||| || |||||| |||||||| ||||||||||| ||||| | |
Sbjct: 317 tgatagggtcggtaaggattccctggatttctgggtcctgcatagctttactctgtttct 376
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || || || ||||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 377 cctgtaagtcctcctgacttatatcacccctgttagccttgttaatctgctcaatacacc 436
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
|||| | ||||||||||||||| ||||| ||||| || ||||||| ||||| || || |
Sbjct: 437 tccttataccatcaagcagttcttggttattcggatcgtgcttcaacccagcttggtaag 496
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||| |||| |||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 497 tttccattgccttctcatgttctttcatgaaaaactgaattgcaccttttcttgtatacc 556
Query: 675 ctttagtgaaggtggggtctagttcaa 701
|||| | |||||| |||||||| ||||
Sbjct: 557 ctttggagaaggttgggtctagctcaa 583
>gb|CN816740.1|CN816740 HRO4524_C03_F06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_C03_F06, mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 188 ccaattggggaagaaaa 204
|||||||||||||||||
Sbjct: 418 ccaattggggaagaaaa 402
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3161
Number of Sequences: 8143
Number of extensions: 3161
Number of successful extensions: 902
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 6
length of query: 1151
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1135
effective length of database: 4,572,175
effective search space: 5189418625
effective search space used: 5189418625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)