BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404863.2.1
(672 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Aven... 289 2e-078
gb|CN816486.1|CN816486 HRO4521_C09_E17ZS5 Lib AA071E1X Aven... 274 9e-074
gb|CN816344.1|CN816344 HRO4519_F08_L15ZS5 Lib AA071E1X Aven... 44 2e-004
>gb|CN817629.1|CN817629 HRO4463_B12_C23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_B12_C23, mRNA sequence
Length = 781
Score = 289 bits (146), Expect = 2e-078
Identities = 233/262 (88%)
Strand = Plus / Plus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||| || || || |||||||||
Sbjct: 341 ggacctggatgtgttgtggaggatggcgtgaggctttcccgatgtacggtgatgcgtggt 400
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
| |||||| ||||||||||| |||||||| ||||||||| | || |||||||| |||||
Sbjct: 401 gcgcgtattaagaagcatgcttgcatctcaaacagcattgttggatggcactcgactgtc 460
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| |||||||||| ||||| |||||||| |||||||| |||||||| |||| |||||
Sbjct: 461 ggaaaatgggcacgcatagaaaatatgactatcctgggagaggatgtacatgtaggtgat 520
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||
Sbjct: 521 gaggtctacagcaatggtggtgttgttctaccacacaaagagatcaagtcaagcatcctg 580
Query: 241 aagcctgagatcgtcatgtgag 262
||||||||||||||||||||||
Sbjct: 581 aagcctgagatcgtcatgtgag 602
>gb|CN816486.1|CN816486 HRO4521_C09_E17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C09_E17, mRNA sequence
Length = 431
Score = 274 bits (138), Expect = 9e-074
Identities = 231/262 (88%)
Strand = Plus / Plus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 41 ggacctggatgtgttgtggaggatggtgtgaggctttcccgatgtacggtgatgcgtggc 100
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
| |||||| ||||||||||| |||||||| ||||||||| | || |||||||| ||||||
Sbjct: 101 gcgcgtattaagaagcatgcttgcatctcaaacagcattgttggatggcactcgactgtt 160
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| |||||||||| ||||| |||||||| |||||||| |||||||| |||| |||||
Sbjct: 161 ggaaaatgggcacgcatagaaaatatgactatcctgggagaggatgtacatgtaggtgat 220
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||
Sbjct: 221 gaggtctacagcaatggtggtgttgttctaccacacaaagagatcaagtcaagcatcctg 280
Query: 241 aagcctgagatcgtcatgtgag 262
||||| ||||||||||||||||
Sbjct: 281 aagcccgagatcgtcatgtgag 302
>gb|CN816344.1|CN816344 HRO4519_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_F08_L15, mRNA sequence
Length = 261
Score = 44.1 bits (22), Expect = 2e-004
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 220 gagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
||||||||||| ||||| | ||||| |||||||||||||||
Sbjct: 24 gagatcaagtccagcatactcaagcccgagatcgtcatgtga 65
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1575
Number of Sequences: 8143
Number of extensions: 1575
Number of successful extensions: 406
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 3
length of query: 672
length of database: 4,702,463
effective HSP length: 16
effective length of query: 656
effective length of database: 4,572,175
effective search space: 2999346800
effective search space used: 2999346800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)