BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Aven... 42 8e-004
gb|CN816488.1|CN816488 HRO4521_C11_E21ZS5 Lib AA071E1X Aven... 36 0.048
gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Aven... 34 0.19
>gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_F01_K02, mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 8e-004
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 168 atctgcagacctctactgaaggcctggttgaacagcatccttggctggaactc 220
||||| || ||||||||||| || || ||||||||||||| | |||||||||
Sbjct: 93 atctgaagtcctctactgaacgcttgattgaacagcatccgcgtctggaactc 41
>gb|CN816488.1|CN816488 HRO4521_C11_E21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C11_E21, mRNA sequence
Length = 680
Score = 36.2 bits (18), Expect = 0.048
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 627 ttcaaatgataaacaaga 644
||||||||||||||||||
Sbjct: 239 ttcaaatgataaacaaga 256
>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
Length = 869
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 722 ctcctgctctttttcccacca 742
|||||||||||| ||||||||
Sbjct: 98 ctcctgctctttctcccacca 78
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1652
Number of Sequences: 8143
Number of extensions: 1652
Number of successful extensions: 393
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 6
length of query: 830
length of database: 4,702,463
effective HSP length: 16
effective length of query: 814
effective length of database: 4,572,175
effective search space: 3721750450
effective search space used: 3721750450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)