BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.4
(806 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Aven... 163 3e-040
gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Aven... 159 5e-039
gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Aven... 159 5e-039
gb|CN821349.1|CN821349 HRO4424_C10_F20ZS5 Lib AA069E1X Aven... 159 5e-039
gb|CN820243.1|CN820243 HRO4417_B07_C13ZS5 Lib AA069E1X Aven... 64 2e-010
gb|CN816521.1|CN816521 HRO4521_G01_M01ZS5 Lib AA071E1X Aven... 40 0.003
gb|CN814852.1|CN814852 HRO4503_B11_D21ZS5 Lib AA071E1X Aven... 34 0.18
>gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_B09_D18, mRNA
sequence
Length = 678
Score = 163 bits (82), Expect = 3e-040
Identities = 345/433 (79%), Gaps = 6/433 (1%)
Strand = Plus / Plus
Query: 43 cgcccagtagctactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaac 102
|||||| ||||||||| || |||||||||||| |||| | |||||| ||||| ||||
Sbjct: 83 cgcccactagctactccgctgattggcaggttacttatgcatatgcacgtaatgggaaac 142
Query: 103 cgattggaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacgggt 162
| || ||||| ||||||||||| | ||||| ||||| || || ||||||||||| |
Sbjct: 143 caataggacctaaggcgaattctgattggctttacatggctccatttgggatgtacggat 202
Query: 163 gcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaa 222
| ||||| ||| ||||| |||||||||| |||||| | ||| |||||| || || ||||
Sbjct: 203 gtgtgaattacatcaagcagaagtatggtaatccagcagtcttcataactgaaaatggaa 262
Query: 223 tggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggt 282
|||| || ||||| ||| | ||||| || |||||| ||||||| |||||||||| ||||
Sbjct: 263 tggatcaacctgggaacctcacccgtgatcagtacttgcgcgataccacgagggttcggt 322
Query: 283 tctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctg 342
||||| |||||||| || | | |||||||| | ||| ||| | || || ||||||| ||
Sbjct: 323 tctaccggagctacctcaacgaactgaagaaaggcatcgacaatggcgcaaacgtggttg 382
Query: 343 gctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagt 402
||||||| || |||||||| || |||||||| |||||| | || ||| | |||||||
Sbjct: 383 gctactttgcttggtctctgctggacaactttgagtggagctctggctacacatccaagt 442
Query: 403 tcggcatcgtctacgtggacttcaaca------cgctcgaacgccacccgaaggcgtcgg 456
||||||||||||| || |||||||||| | || || || || |||||||||||||
Sbjct: 443 tcggcatcgtctatgtcgacttcaacagcccctccctagagcgtcatccgaaggcgtcgg 502
Query: 457 cctactggttcag 469
|||||||||||||
Sbjct: 503 cctactggttcag 515
>gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E10_J19, mRNA sequence
Length = 707
Score = 159 bits (80), Expect = 5e-039
Identities = 343/431 (79%), Gaps = 6/431 (1%)
Strand = Plus / Plus
Query: 45 cccagtagctactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccg 104
|||| ||||||||| || |||||||||||| |||| | |||||| ||||| |||||
Sbjct: 203 cccactagctactccgctgattggcaggttacttatgcatatgcacgtaatgggaaacca 262
Query: 105 attggaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgc 164
|| ||||| |||| |||||| | ||||| |||||||| ||| ||||||||||| ||
Sbjct: 263 ataggacctaaggcaaattctgattggctttacatcgctccgtttgggatgtacggatgt 322
Query: 165 gtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatg 224
||||| ||| ||||| |||||||||| |||||| | ||| |||||| || || ||||||
Sbjct: 323 gtgaattacatcaagcagaagtatggtaatccagcagtcttcataactgaaaatggaatg 382
Query: 225 gaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttc 284
|| || ||||| ||| | |||| || |||||| ||||||| |||||||||| ||||||
Sbjct: 383 gatcaacctgggaacctcacccttgatcagtacttgcgcgataccacgagggttcggttc 442
Query: 285 tacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggc 344
||| |||||||| || | | |||||||| | ||| ||| | || || ||||||| ||||
Sbjct: 443 taccggagctacctcaacgaactgaagaaaggcatcgacaatggtgcaaacgtggttggc 502
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
||||| || ||||||||||| |||||||| |||||| | || ||| | || ||||||
Sbjct: 503 tactttgcatggtctctcctggacaactttgagtggagctctggctacacatctaagttc 562
Query: 405 ggcatcgtctacgtggacttcaaca------cgctcgaacgccacccgaaggcgtcggcc 458
||||||||||| || |||||||||| | || || || || |||||||||||||||
Sbjct: 563 ggcatcgtctatgtcgacttcaacagcccctccctagagcgtcatccgaaggcgtcggcc 622
Query: 459 tactggttcag 469
|||||||||||
Sbjct: 623 tactggttcag 633
>gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G11_M21, mRNA
sequence
Length = 840
Score = 159 bits (80), Expect = 5e-039
Identities = 343/431 (79%), Gaps = 6/431 (1%)
Strand = Plus / Plus
Query: 45 cccagtagctactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccg 104
|||| ||||||||| || |||||||||||| |||| | |||||| ||||| |||||
Sbjct: 288 cccactagctactccgctgattggcaggttacttatgcatatgcacgtaatgggaaacca 347
Query: 105 attggaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgc 164
|| ||||| |||| |||||| | ||||| |||||||| ||| ||||||||||| ||
Sbjct: 348 ataggacctaaggcaaattctgattggctttacatcgctccgtttgggatgtacggatgt 407
Query: 165 gtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatg 224
||||| ||| ||||| |||||||||| |||||| | ||| |||||| || || ||||||
Sbjct: 408 gtgaattacatcaagcagaagtatggtaatccagcagtcttcataactgaaaatggaatg 467
Query: 225 gaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttc 284
|| || ||||| ||| | |||| || |||||| ||||||| |||||||||| ||||||
Sbjct: 468 gatcaacctgggaacctcacccttgatcagtacttgcgcgataccacgagggttcggttc 527
Query: 285 tacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggc 344
||| |||||||| || | | |||||||| | ||| ||| | || || ||||||| ||||
Sbjct: 528 taccggagctacctcaacgaactgaagaaaggcatcgacaatggtgcaaacgtggttggc 587
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
||||| || ||||||||||| |||||||| |||||| | || ||| | || ||||||
Sbjct: 588 tactttgcatggtctctcctggacaactttgagtggagctctggctacacatctaagttc 647
Query: 405 ggcatcgtctacgtggacttcaaca------cgctcgaacgccacccgaaggcgtcggcc 458
||||||||||| || |||||||||| | || || || || |||||||||||||||
Sbjct: 648 ggcatcgtctatgtcgacttcaacagcccctccctagagcgtcatccgaaggcgtcggcc 707
Query: 459 tactggttcag 469
|||||||||||
Sbjct: 708 tactggttcag 718
>gb|CN821349.1|CN821349 HRO4424_C10_F20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C10_F20, mRNA
sequence
Length = 628
Score = 159 bits (80), Expect = 5e-039
Identities = 343/431 (79%), Gaps = 6/431 (1%)
Strand = Plus / Plus
Query: 45 cccagtagctactctgccgattggcaggttcaatatgtttttgcacgcaatggcaaaccg 104
|||| ||||||||| || |||||||||||| |||| | |||||| ||||| |||||
Sbjct: 29 cccactagctactccgctgattggcaggttacttatgcatatgcacgtaatgggaaacca 88
Query: 105 attggaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgc 164
|| ||||| |||| |||||| | ||||| |||||||| ||| ||||||||||| ||
Sbjct: 89 ataggacctaaggcaaattctgattggctttacatcgctccgtttgggatgtacggatgt 148
Query: 165 gtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatg 224
||||| ||| ||||| |||||||||| |||||| | ||| |||||| || || ||||||
Sbjct: 149 gtgaattacatcaagcagaagtatggtaatccagcagtcttcataactgaaaatggaatg 208
Query: 225 gaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttc 284
|| || ||||| ||| | |||| || |||||| ||||||| |||||||||| ||||||
Sbjct: 209 gatcaacctgggaacctcacccttgatcagtacttgcgcgataccacgagggttcggttc 268
Query: 285 tacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggc 344
||| |||||||| || | | |||||||| | ||| ||| | || || ||||||| ||||
Sbjct: 269 taccggagctacctcaacgaactgaagaaaggcatcgacaatggtgcaaacgtggttggc 328
Query: 345 tacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttc 404
||||| || ||||||||||| |||||||| |||||| | || ||| | || ||||||
Sbjct: 329 tactttgcatggtctctcctggacaactttgagtggagctctggctacacatctaagttc 388
Query: 405 ggcatcgtctacgtggacttcaaca------cgctcgaacgccacccgaaggcgtcggcc 458
||||||||||| || |||||||||| | || || || || |||||||||||||||
Sbjct: 389 ggcatcgtctatgtcgacttcaacagcccctccctagagcgtcatccgaaggcgtcggcc 448
Query: 459 tactggttcag 469
|||||||||||
Sbjct: 449 tactggttcag 459
>gb|CN820243.1|CN820243 HRO4417_B07_C13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_B07_C13, mRNA
sequence
Length = 335
Score = 63.9 bits (32), Expect = 2e-010
Identities = 109/135 (80%), Gaps = 6/135 (4%)
Strand = Plus / Plus
Query: 341 tggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaa 400
||||||||| || ||||||||||| |||||||| |||||| | || ||| | || ||
Sbjct: 16 tggctactttgcatggtctctcctggacaactttgagtggagctctggctacacatctaa 75
Query: 401 gttcggcatcgtctacgtggacttcaaca------cgctcgaacgccacccgaaggcgtc 454
||||||||||||||| || |||||||||| | || || || || |||||||||||
Sbjct: 76 gttcggcatcgtctatgtcgacttcaacagcccctccctagagcgtcatccgaaggcgtc 135
Query: 455 ggcctactggttcag 469
|||||||||||||||
Sbjct: 136 ggcctactggttcag 150
>gb|CN816521.1|CN816521 HRO4521_G01_M01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G01_M01, mRNA sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.003
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 327 ggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggct 382
||||| |||||| ||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 298 ggagcaaacgtgcgtggctacttcgtgtggagtctcatagacaacttcgagtggct 353
>gb|CN814852.1|CN814852 HRO4503_B11_D21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_B11_D21, mRNA sequence
Length = 502
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 366 gacaacttcgagtggct 382
|||||||||||||||||
Sbjct: 66 gacaacttcgagtggct 82
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1884
Number of Sequences: 8143
Number of extensions: 1884
Number of successful extensions: 489
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 17
length of query: 806
length of database: 4,702,463
effective HSP length: 16
effective length of query: 790
effective length of database: 4,572,175
effective search space: 3612018250
effective search space used: 3612018250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)